Query= MSMg01no074_a03.b1 MSMg01no074_a03.b1 CHROMAT_FILE:
MSMg01no074_a03.b1 PHD_FILE: MSMg01no074_a03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:15 2005
(499 letters)
>mm_chr8_116751704_116752603
Length = 900
Score = 922 bits (477), Expect = 0.0
Identities = 492/497 (98%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 4 ggaattcaagtctcacctttaccacttctaactacacaatcttgaataaatcaataagtt 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ggaattcaagtctcaagtttaccacttctaactacacaatcttgaataaatcaataagtt 781
Query: 64 ggcttctctgtcctcagttttctcatctgcgagacaaggattaggtagcacccatttcac 123
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 780 ggcttctctgtcctcagttttctcatctgcgagacaaggattaggcagcacccatttcac 721
Query: 124 aggcttgttgtaaaaatgaagggtcaagccctgaaatgtagcaccagttctcaagaaaca 183
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 720 aggcttgttgtaaaaatgaagggtcaagccctgaaatgtagcgccagttctcaagaaaca 661
Query: 184 ctggctcagagcacatgtctttagttaagaaggcaagaagtatgtgtacatttcaggaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ctggctcagagcacatgtctttagttaagaaggcaagaagtatgtgtacatttcaggaag 601
Query: 244 cctcacccctctttttaaaataaaatgtgct-aaaaatccatttcagagctgacacagga 302
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 600 cctcacccctctttttaaaataaaatgtgctaaaaaatccatttcagagctgacacagga 541
Query: 303 caatatcagctgtgtaccaacctcacttctgtgaaaagatccattgtccaaagggtccct 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 caatatcagctgtgtaccaacctcacttctgtgaaaagatccattgtccaaagggtccct 481
Query: 363 gtagaacagtaaaaagaatttctgtctcaaatcaagcacttcacctcaccccacgcacag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gtagaacagtaaaaagaatttctgtctcaaatcaagcacttcacctcaccccacgcacag 421
Query: 423 ttcagctcactgctcccctttgtgtgagaacttacgggttttccaagaccctgatagaga 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 ttcagctcactgctcccctttgtgtgagaacttacgggttttccaagaccctgatagaga 361
Query: 483 aatgccagaaaataatc 499
|||||||||||||||||
Sbjct: 360 aatgccagaaaataatc 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 900
Length adjustment: 10
Effective length of query: 489
Effective length of database: 890
Effective search space: 435210
Effective search space used: 435210
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_a03.g1 MSMg01no074_a03.g1 CHROMAT_FILE:
MSMg01no074_a03.g1 PHD_FILE: MSMg01no074_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:15 2005
(284 letters)
>mm_chr8_116612552_116613235
Length = 684
Score = 480 bits (248), Expect = e-140
Identities = 272/280 (97%)
Strand = Plus / Plus
Query: 1 acagatgtcagctgccatctactggagcatcttaggaaaaatgacccgggattagagaag 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 acagatgtcagctgccatctactggagcatcttaggaaaaatgaattgggattagagaag 260
Query: 61 gaaggatagagtgcaaagctgagatactccatatctgatgccctgaacatagtgacgcca 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaggatagagtgcgaagctgagatactccatatctgatgccctgaacatagtgacgcca 320
Query: 121 ttgattctggactggtgttcattactgctttataattttgcctcagggatattgggaatg 180
||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 ttgattctggactcgtgttcattactgctttatcattttgcctcagggatattgggaatg 380
Query: 181 ctctccttattccagaaggttcattgaatgttgctatggagatgggaattgctctgacat 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ctctccttattccagaaggttcattggatgttgctatggagatgggaattgctctgacat 440
Query: 241 ctgcatgcgcatgcacacacacacacacacacacacacac 280
|||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ctgcatgcacatgcacacacacacacacacacacacacac 480
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
