BAC Information

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BAC

Clone NameMSMg01-074A10
Chromosome8 (Build37)
Map Location 65,456,132 - 65,456,260
singlet/doubletsinglet
Overlap geneSpock3
Upstream geneBC013672, Anxa10, LOC100040775, LOC384830, LOC100040804, LOC665267
Downstream geneLOC384831, EG244495
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074A10.T7 (MSMg01no074_a10.b1)MSMg01-074A10.TJ (MSMg01no074_a10.g1)
ACCAG297178AG297179
length719718
length of high quality
(start - end)
177 (150 - 326)190 (125 - 314)
definitionCHROMAT_FILE: MSMg01no074_a10.b1 PHD_FILE: MSMg01no074_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:16 2005CHROMAT_FILE: MSMg01no074_a10.g1 PHD_FILE: MSMg01no074_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
ACATCTTTACCACTGGAGCTTTACCAAGTTCAGTAGAGATTATTTGAAGA
CATGTTCCTTGTTACCCCCCTCATTTTTGATGTCTAGAGTGTCAAATACA
TTCCCAATCACGGTTCTCCAAACAAGTGCCAAGCTCTGCATTCCTATGGG
ACTGTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTATTA
GGTATTTTCTTCGTTTATATTTCAAGCCCCCCATACCCTCCCCCCCTCCA
CTATCCACCCACTTCTACTTCTTGGCCCTCGCTTTCCCAGGCATGTACAG
TCTTGTTTTTCCAATGCCCCTCTCCACTGATGGCTGACTAGTTCATCTTC
CGATACCTATGCAGCTAGAGACACAAATTCTGGGGGGTACTGGCTAGTTC
ATATTGTTGTTACATCTATACGGTTGTAGATCCCCTTTAACTCCTTGAGT
TCTTTTCTCTACCTTCTCCATTGCCTGCCCCGTGACTCATTTAATACCTG
ATTGTTGACACCCCCTTTTTTTGTTTGCTATGTCCTTATAATAACTCCCT
AATCAATCATCTTCTCTCCCCGCCCCCTTCCCCTTAATTTTTGCACCTCC
TTCTACCCTCCCTGCGCCCCCCTTTTTTTCGCCATTTTTAGCCGCCCCCC
CCCCCACTTTTTCTAATTT
TTGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATCTGTAATATGAAATGTATATATATATG
TGTGTGTGTATTATATACCTATATACACACATACATATATACATACATAT
ATATATATATATATATATATATATATATATATATATATATACTCCTTTGT
AATTACCTGGGTACTAGCAGTTTGTCAGTATTCCACCTAGTTAATGTGGG
ATTAAGTGATTGGTTTTCCTTGAAATAGCTTATGAATATAATCACTTATT
ATATTCTCAATACAGAATAAAGAATGCGAACTGTTGGACAATTTCCTATA
CAATATTTTTATATACGCCCCGCTCCCCAGGATAATTTACTGTTTAAACA
CAAAGACTCACAAGGATATGGAAGTAATACAGACACGTGTAGTGAATTTT
TTACCTTGTATCATACTGATACAATCCATACTTCTGTATAACATATATCT
CCCCCCCACGCCTGTGAGGCTGTATTCCGATTGCTTAATCACAGGGTGTT
ATGATTTCATTATTCCCATGTATTGATGCCTTGCGCTTATATCTACACCT
CTCTCTCCTTGGGAAAGACCGCACACTCCCCCTTCTTTTGATTTTTTGTT
TTTTTGCCCGTAACCTCCCTTGGTATCTTTTGTTTCACTCGTTCCCTCCT
TCTCTGCTACTGCCCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_a10.g1 MSMg01no074_a10.g1 CHROMAT_FILE:
MSMg01no074_a10.g1 PHD_FILE: MSMg01no074_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:16 2005
         (190 letters)



>mm_chr8_65455873_65456462
          Length = 590

 Score =  250 bits (129), Expect = 5e-71
 Identities = 129/129 (100%)
 Strand = Plus / Plus

                                                                       
Query: 60  tatatatactcctttgtaattacctgggtactagcagtttgtcagtattccacctagtta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatatatactcctttgtaattacctgggtactagcagtttgtcagtattccacctagtta 319

                                                                       
Query: 120 atgtgggattaagtgattggttttccttgaaatagcttatgaatataatcacttattata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 atgtgggattaagtgattggttttccttgaaatagcttatgaatataatcacttattata 379

                    
Query: 180 ttctcaata 188
           |||||||||
Sbjct: 380 ttctcaata 388


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 190
Length of database: 590
Length adjustment: 8
Effective length of query: 182
Effective length of database: 582
Effective search space:   105924
Effective search space used:   105924
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)