Query= MSMg01no074_b06.b1 MSMg01no074_b06.b1 CHROMAT_FILE:
MSMg01no074_b06.b1 PHD_FILE: MSMg01no074_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:20 2005
(577 letters)
>mm_chr8_115257841_115258817
Length = 977
Score = 1089 bits (563), Expect = 0.0
Identities = 572/575 (99%), Gaps = 1/575 (0%)
Strand = Plus / Plus
Query: 4 ggaattcattttttacaatgtgccatgccctcagcataaattaaaacagacaaggaagac 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcattttttaaaatgtgccatgccctcagcataaattaaaacagacaaggaagac 263
Query: 64 ctctgccagaatataaaatgtctttgaaatatcttcacttaaaaaaagaaaggcagggac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctctgccagaatataaaatgtctttgaaatatcttcacttaaaaaaagaaaggcagggac 323
Query: 124 cacagatttcacttagacttcccgtgacgaagcattctattacatgtgtttgtttgtttc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cacagatttcacttagacttcccgtgacgaagcattctattacatgtgtttgtttgtttc 383
Query: 184 tgtagggaagggacctaagagttgttgatagttcactcaagccacaccattctaggaggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgtagggaagggacctaagagttgttgatagttcactcaagccacaccattctaggaggg 443
Query: 244 gctctgctattatagagcagtcagttggttaacacgatctacagcaatcaggcaaacaag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gctctgctattatagagcagtcagttggttaacacgatctacagcaatcaggcaaacaag 503
Query: 304 ctggggtttggagagattcaagcattgactcaatagcttacaattaacacttgggaaact 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ctggggtttggagagattcaagcattgactcaatagcttacaattaacacttgggaaact 563
Query: 364 ccaggatcaaacacagatctgttcagttttactacatcattacccctctagtaaaatttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ccaggatcaaacacagatctgttcagttttactacatcattacccctctagtaaaatttc 623
Query: 424 atttactttatttatttatctttttttaa-tttttttgccacattttaaaaaaaattaat 482
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 624 atttactttatttatttatctttttttaaatttttttgccacatttttaaaaaaattaat 683
Query: 483 ttagccctgtgtttctgtgtgggcttgtgcatatatgggtagatccccttggaggtcaga 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttagccctgtgtttctgtgtgggcttgtgcatatatgggtagatccccttggaggtcaga 743
Query: 543 agatggcgtcagattccctgaagtttgagctacag 577
|||||||||||||||||||||||||||||||||||
Sbjct: 744 agatggcgtcagattccctgaagtttgagctacag 778
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no074_b06.g1 MSMg01no074_b06.g1 CHROMAT_FILE:
MSMg01no074_b06.g1 PHD_FILE: MSMg01no074_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:20 2005
(553 letters)
>mm_chr8_115442849_115443798
Length = 950
Score = 1015 bits (525), Expect = 0.0
Identities = 545/553 (98%), Gaps = 3/553 (0%)
Strand = Plus / Minus
Query: 1 agttttctgtgtagcctctatggaaacaaggcttatgcattctcatgatatattgggcta 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 594 agttttctgtgtagcctctatgaaaacaaggcttatgcattctcatgatatattgggcta 535
Query: 61 caaaatggcctccctatggtcataaaagcaggaggtggcaataaagacaaaacaagattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 caaaatggcctccctatggtcataaaagcaggaggtggcaataaagacaaaacaagattt 475
Query: 121 agcttaaatgtgtctactctcagtaaagctctcttctggtctctaggtagaaatgcgagt 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 474 agcttaaatgtgtctactctcagtaaagccctcttctggtctctaggtagaaatgcgagt 415
Query: 181 tttgtatagcaggagacaggtggagactgggaatcaaagcctcttgtctttctttgtaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tttgtatagcaggagacaggtggagactgggaatcaaagcctcttgtctttctttgtaag 355
Query: 241 cctgaagaagctacttcaacaagaactttggcattgccatggaatctactgtactttaca 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 cct---gaagctacttcaacaagaactttggcattgccatggaatctactgtactttaca 298
Query: 301 cattgaaggtttttcagaatgttttgccctttcagttcttttgcatctgtgaaggttgga 360
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 297 cattgaaggtttttcagaatgttttaccctttcagttcttttgcatctgtgaaggttgga 238
Query: 361 gggcaacatacgagactcagtttgctccttcaatcatgtgagttccttccttctaccaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gggcaacatacgagactcagtttgctccttcaatcatgtgagttccttccttctaccaca 178
Query: 421 ctggattccagggatagaactcaggtcatcaagattggtggcaagggcctttacccacag 480
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 177 ctggattccagggatagaactcaggtcatcaagattggtggcaagtgcctttacccacag 118
Query: 481 agccatctcactggcccagatataccctttgaaaggcagatgacaggcctggaaagatgg 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 117 agccatctcactggcccagatataccctttgaaaggcaggtgacaggcctggaaagatgg 58
Query: 541 ctgagtgattaag 553
|||||||||||||
Sbjct: 57 ctgagtgattaag 45
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 950
Length adjustment: 10
Effective length of query: 543
Effective length of database: 940
Effective search space: 510420
Effective search space used: 510420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
