BAC Information

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BAC

Clone NameMSMg01-074C10
Chromosome8 (Build37)
Map Location 30,892,289 - 30,892,524
singlet/doubletsinglet
Overlap genenone
Upstream geneUnc5d, LOC100041237
Downstream geneEG628189
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074C10.T7 (MSMg01no074_c10.b1)MSMg01-074C10.TJ (MSMg01no074_c10.g1)
ACCAG297274AG297275
length718729
length of high quality
(start - end)
135 (124 - 258)236 (123 - 358)
definitionCHROMAT_FILE: MSMg01no074_c10.b1 PHD_FILE: MSMg01no074_c10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:26 2005CHROMAT_FILE: MSMg01no074_c10.g1 PHD_FILE: MSMg01no074_c10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAGAGCAAGTCCTCAAAGAGCCAGAACCTGGAAGCAGGAACTTTTGAAGA
GCATGAAGGAGTGCTGCCACCAGGCTTGTTTCTTATAACTTTAAGCTGCC
TTCTTATAGAACCAAGGATCAGCTGCCTGAGGTTAGCACTATCCATAAAG
GACTGACTCATCTTCCATCAATCACTAATTAAGAAATTTTTCTACAGGCT
TGCCTGCATCTGGTTACTTAGAGGCATCCTCTTTTCTTTTTTTTTTATTT
GATATTTTCTTTACCTACATTTCGAATGTTATCCCCTTTCCTGCTCCTCC
ACTTCATTCTCAGGGAAACCCCCTATCCCATCCTCCTCTTGGTTTGCTTT
TATAAGGGTGTTCCCATAAACACCTATCTTCTCCCGCCTCTCCACCCTCG
AATTTCCCTACATTGCTTCATCCACCAATGAATGGGTCATCTTAACGAAT
GTTCCCTACCACCCCATGACATTACCCTGCGCCCAAGTGATTTGAACCCT
CTTATAGCACAACACCCTTTTTATCTTTACCGAACTAAGTTCATAAACGC
TTCCCTTTCGGCATCTCCCACGCATGGCTCCCCTTATTAATTCTCCTGAT
TGTCCCTTATTTCCCACCCCCTTTTTTATCCCGATTCTTTTTACACCGGC
CCCTTTTATGTTCTGCTC
GTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAGGTGTCTTATTAAATTTGGCTTGAGATC
CAGCACAAGGTACAGTCTCCTAAAATGGGAAAGATATTTTCAAAATATTG
CAACATCACAGAGGAGGACACCACTTAGTCATAGGAAACAATGGGAATGC
CTTGATAAAATGGAAATAAACTCTTTTAAGCTTGTTTTTCACATGAGTTC
AATTTAAGCCACACTTATGGCTACATTCATTGGTTGCTTCCTTTATAGAT
TATCTCTCAGTCTCAAAATAATTGCCTCCTAGATTAAATACCACTAGTTA
TATGGCTGTATAAGAGATCCGCACATATGTTTTATAAGCAAATGTACCTA
ATATTAATTTACCCAGAAAAGGATATTATGTTAGAAGAAAATTACAGAGA
ATTCATAAGCCAGCATATTTACCTGTTCATACTCCTTACCATGTTGAGAT
TCCCCATTGCCTCTTTAGAAAAAAATGCCTACATCTGTAACTTGCCTTAA
GGTTACCTCGACTGTCTTTCCAATTTGAGAAATTCTGTTTAAGACCCGCT
TTCTGCGTAGTCTATCCATGGACCTCAATCGGCCAAGCGCCCCTTGCCCG
AACTACCTGCAACCCTTCCTCGGAAACACCATTCCTTACCTCCTTTTGGG
CCCCCTGACTCTTCCAAACGCTCCTACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_c10.g1 MSMg01no074_c10.g1 CHROMAT_FILE:
MSMg01no074_c10.g1 PHD_FILE: MSMg01no074_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:26 2005
         (236 letters)



>mm_chr8_30892089_30892724
          Length = 636

 Score =  449 bits (232), Expect = e-131
 Identities = 235/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaatgggaaagatattttcaaaatattgcaacatcacagaggaggacaccacttagtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatgggaaagatattttcaaaatattgcaacatcacagaggaggacaccacttagtcat 260

                                                                       
Query: 61  aggaaacaatgggaatgccttgataaaatggaaataaactcttttaagcttgtttttcac 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 261 aggaaacaatgggaatgccttgatacaatggaaataaactcttttaagcttgtttttcac 320

                                                                       
Query: 121 atgagttcaatttaagccacacttatggctacattcattggttgcttcctttatagatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgagttcaatttaagccacacttatggctacattcattggttgcttcctttatagatta 380

                                                                   
Query: 181 tctctcagtctcaaaataattgcctcctagattaaataccactagttatatggctg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctctcagtctcaaaataattgcctcctagattaaataccactagttatatggctg 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)