BAC Information

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BAC

Clone NameMSMg01-074D24
Chromosome8 (Build37)
Map Location 73,028,232 - 73,236,450
singlet/doubletdoublet
Overlap gene2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15, Pgpep1, Lsm4, Jund1, 2410018E23Rik
Upstream geneEG665578, LOC622336, LOC100041482, LOC673968, AI449175, EG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1
Downstream geneLOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a, Jak3, Insl3, B3gnt3, LOC100042289, Fcho1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074D24.T7 (MSMg01no074_d24.b1)MSMg01-074D24.TJ (MSMg01no074_d24.g1)
ACCAG297350AG297351
length724779
length of high quality
(start - end)
241 (77 - 317)223 (130 - 352)
definitionCHROMAT_FILE: MSMg01no074_d24.b1 PHD_FILE: MSMg01no074_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:33 2005CHROMAT_FILE: MSMg01no074_d24.g1 PHD_FILE: MSMg01no074_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,028,232 - 73,028,472)(73,236,228 - 73,236,450)
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCTTTATTGTTCCCGAGACATTGGAGGGCAGCCCAGCAGGGCACGACC
TCAGCCAGCTGGCGGTCAGGGCTGGGCTCGACGCCATGGGCCTCTTTTCC
CGGCTTCCTCTGGTCCCTGGGGAGCCGCCCTCACTCGGCAGATTCCGCAT
CAAACCTGAGTTCCTGCAGAACCTCGCCGATCGCCTCCATGGTTTTAATT
ACCCTACAAGAGCGGATGGAAACTATAAATAAAACCCAGATGGGGTGAAT
TAGCTGAGCTGCACAGCTAGTGTTGAGGGGGGCTATGGCAAGCCTTGGGC
CCTCCTGCTTGCTGCCAAACCTCAAGCCCAGTCTGGGAGCATGCCCAGGA
GGCCGGTCGGCTCGCTGTTTCACAGCATGCTCATGGCAAAGGCCATGGTG
GCGGGGTGAGGGGATGTTTTTTTTACTTGTCCTTTTCCCCTTGTTCTTTT
TTCCCCCCTTTTTCCTCTCTCCTTTTTTTCTTTTCCCCTTTCCTCCGCTT
TTCCTCTTTCCTTTTTACTTCCTCTGTCCTCATGTCCTCTATGTGTGAAC
CTTTTCTCTCCTTTTTTTGTTGTATCGTCGTTCGTTTTTTTGCGCCGTTT
ATCCCCTCCTGCTTATTCTTTTTTTGTCTTCCTTTTTTTTTCCCCCCCCC
CCTTTTTTTTTTCTTTTTTTTTGT
TTTTTTNNNNNNNCCCCCCCCCCCCCCCCCCCCCCCNNCCCCCCCTCCCT
TNNAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGCATGTCACCCTCCCTGCT
ACATTCCAGACCCTCTGAAGGTGGCAAGCTAGATGGAATGGAGGCGCTAG
CGAAGGGGCTGTTCTGCAAGGAGTTCTGAGAGGTACAGCTGTCCTGGCAG
CGGACCCTGGGATAGCTCTTGGCTAACACAATCTGTGGGTGCTGTGGGAT
CTTGGCCAGTAACTCATCCAGAAGGGACCTGTGATGGTCAGTGGCCTGGC
TCATGTAATGGGGTGGGGCTGAGGACACTTGGGGGTGCTTCTCCTGTTTG
AGGGTAGACCTGCTGTTGACTTTCTGTGACTTAGGATTTAGGAACACTGG
TGATGGCTGATCACTACACTGTTCTTCGGCTACCTTCCTGACGATGGTAA
CCATGTCCTTACTGCCCAGTGGTGCCGCTACTCGTCTGTGACCTGACGGC
TTAACCTGCCTACAAGTCTCCTTGGGCATTGTGCTTGCAATCCGGACTAG
AAAAGATCACTAACCACAGGGAGACTTTTTAGTGCCTCCCTGGGTATTGT
ACACTGCACATACATTTGCCATGAAAATTGTTTATAGTGTCTCGATTCAA
TTTGTTCACTTCCCGCCACCCATTCGACTCGATCCGCTTTGCTGGCCATC
AAGTTTTCCCATCTTGGTTTGAACGAACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_d24.b1 MSMg01no074_d24.b1 CHROMAT_FILE:
MSMg01no074_d24.b1 PHD_FILE: MSMg01no074_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:33 2005
         (241 letters)



>mm_chr8_73028032_73028672
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agggcagcccagcagggcacgacctcagccagctggcggtcagggctgggctcgacgcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agggcagcccagcagggcacgacctcagccagctggcggtcagggctgggctcgacgcca 260

                                                                       
Query: 61  tgggcctcttttcccggcttcctctggtccctggggagccgccctcactcggcagattcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggcctcttttcccggcttcctctggtccctggggagccgccctcactcggcagattcc 320

                                                                       
Query: 121 gcatcaaacctgagttcctgcagaacctcgccgatcgcctccatggttttaattacccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcaaacctgagttcctgcagaacctcgccgatcgcctccatggttttaattacccta 380

                                                                       
Query: 181 caagagcggatggaaactataaataaaacccagatggggtgaattagctgagctgcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagagcggatggaaactataaataaaacccagatggggtgaattagctgagctgcacag 440

            
Query: 241 c 241
           |
Sbjct: 441 c 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no074_d24.g1 MSMg01no074_d24.g1 CHROMAT_FILE:
MSMg01no074_d24.g1 PHD_FILE: MSMg01no074_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:34 2005
         (223 letters)



>mm_chr8_73236028_73236650
          Length = 623

 Score =  431 bits (223), Expect = e-125
 Identities = 223/223 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgcatgtcaccctccctgctacattccagaccctctgaaggtggcaagctagatggaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ctgcatgtcaccctccctgctacattccagaccctctgaaggtggcaagctagatggaat 364

                                                                       
Query: 61  ggaggcgctagcgaaggggctgttctgcaaggagttctgagaggtacagctgtcctggca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ggaggcgctagcgaaggggctgttctgcaaggagttctgagaggtacagctgtcctggca 304

                                                                       
Query: 121 gcggaccctgggatagctcttggctaacacaatctgtgggtgctgtgggatcttggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 gcggaccctgggatagctcttggctaacacaatctgtgggtgctgtgggatcttggccag 244

                                                      
Query: 181 taactcatccagaagggacctgtgatggtcagtggcctggctc 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 taactcatccagaagggacctgtgatggtcagtggcctggctc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 223
Length of database: 623
Length adjustment: 9
Effective length of query: 214
Effective length of database: 614
Effective search space:   131396
Effective search space used:   131396
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)