BAC Information

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BAC

Clone NameMSMg01-074F10
Chromosome8 (Build37)
Map Location 75,913,987 - 75,914,423
singlet/doubletsinglet
Overlap genenone
Upstream geneEps15l1, Calr3, LOC100042421, 1700030K09Rik, Cherp, Slc35e1, Crsp7, LOC100042439, 9130011J15Rik, Tmem38a, Nwd1, Sin3b, F2rl3, Large, LOC100039001
Downstream geneLOC666134, Crry-ps, LOC666146
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-074F10.T7 (MSMg01no074_f10.b1)MSMg01-074F10.TJ (MSMg01no074_f10.g1)
ACCAG297418AG297419
length719712
length of high quality
(start - end)
580 (46 - 625)437 (74 - 510)
definitionCHROMAT_FILE: MSMg01no074_f10.b1 PHD_FILE: MSMg01no074_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:40 2005CHROMAT_FILE: MSMg01no074_f10.g1 PHD_FILE: MSMg01no074_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:22:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAAGGCCCCTCACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGAGAGAAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGAAATTCGACAATAAAAGGAGATCAAGGGG
ATACAAATTGGAAAAGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTTCGGTGAAGTAGCTGGAAATAAAATTAACTCAAACAAG
TCAATGGCCTTTCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAG
GGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATATCTCGGTG
TGACTTTAGCAAAGGAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAAATCTCCCATG
CTGATAAATTGGCAGGATCAACATTGGTAAAATTGCTATCTTGCCAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCNACTCAATTCTTC
AACGAATTAGAAGGAGAAN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGTTTTCAATTTTTTTGGAATCCCTAC
TTTTCCATACATCATCTAAGAAACAAAGCATGTAGGCGCTATAAAAGACA
ACATACCCTGGGGCAGATGCTCACAAGCCCAAAGGCTTTCCCCCTTTCTT
CACTATTCAAGTATGAACCAGGCTAGACCCTGCTTAGCTTAGGGTGGTAT
GGCCATAGGCAAGTTTGACTCCTCACTAAAAGACTTGAAGTAGATAATTG
GATATTAAAATCTGAAGGCCAGGAAACATCTAAGCTGAAATTTTCTTAAT
TTTTTGTACTTTTAAAATATGTATATGTACACATATGGGAACATTCATGT
TGAATACAGGTGCCTATTGAGGCCAAGAACTTTTTCCCACTTTCCCCTCT
ATAAGTTTTAGTGTCTCTGGTTTTATGTGGTGTTTCTTGATCCACTTATA
CTTCACTTCTGTACAAGGAGATAATAATGGATTAATTCCCAGTCTTCTAC
ATGATAACTGCCAGCTGAAAAAGCACCATTTGTTGAAAAATCTGCCCTCC
AGTCACCGGATGATTTTAGTTTCCTCGAACTAGATATAGGGACCACACGT
GCGTGGCCTGCTTTCTTGGGTCGTTTTTCCCCACCCCAGACTTGGTGTTT
GTCGAGTGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no074_f10.g1 MSMg01no074_f10.g1 CHROMAT_FILE:
MSMg01no074_f10.g1 PHD_FILE: MSMg01no074_f10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:22:40 2005
         (437 letters)



>mm_chr8_75913787_75914623
          Length = 837

 Score =  837 bits (433), Expect = 0.0
 Identities = 436/437 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttcaatttttttggaatccctacttttccatacatcatctaagaaacaaagcatgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agttttcaatttttttggaatccctacttttccatacatcatctaagaaacaaagcatgt 260

                                                                       
Query: 61  aggcgctataaaagacaacataccctggggcagatgctcacaagcccaaaggctttcccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcgctataaaagacaacataccctggggcagatgctcacaagcccaaaggctttcccc 320

                                                                       
Query: 121 ctttcttcactattcaagtatgaaccaggctagaccctgcttagcttagggtggtatggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttcttcactattcaagtatgaaccaggctagaccctgcttagcttagggtggtatggc 380

                                                                       
Query: 181 cataggcaagtttgactcctcactaaaagacttgaagtagataattggatattaaaatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cataggcaagtttgactcctcactaaaagacttgaagtagataattggatattaaaatct 440

                                                                       
Query: 241 gaaggccaggaaacatctaagctgaaattttcttaattttttgtacttttaaaatatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaggccaggaaacatctaagctgaaattttcttaattttttgtacttttaaaatatgta 500

                                                                       
Query: 301 tatgtacacatatgggaacattcatgttgaatacaggtgcctattgaggccaagaacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tatgtacacatatgggaacattcatgttgaatacaggtgcctattgaggccaagaacttt 560

                                                                       
Query: 361 ttcccactttcccctctataagttttagtgtctctggttttatgtggtgtttcttgatcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttcccactttcccctctataagttttagtgtctctggttttatgtggtgtttcttgatcc 620

                            
Query: 421 acttatacttcacttct 437
           ||||| |||||||||||
Sbjct: 621 acttagacttcacttct 637


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 437
Length of database: 837
Length adjustment: 9
Effective length of query: 428
Effective length of database: 828
Effective search space:   354384
Effective search space used:   354384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)