BAC Information

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BAC

Clone NameMSMg01-075G04
Chromosome8 (Build37)
Map Location 117,868,734 - 118,017,293
singlet/doubletdoublet
Overlap geneWwox
Upstream geneAI427515, Clec3a
Downstream geneMaf, LOC384868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075G04.T7 (MSMg01no075_g04.b1)MSMg01-075G04.TJ (MSMg01no075_g04.g1)
ACCAG298215AG298216
length720718
length of high quality
(start - end)
171 (72 - 242)245 (73 - 317)
definitionCHROMAT_FILE: MSMg01no075_g04.b1 PHD_FILE: MSMg01no075_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:02 2005CHROMAT_FILE: MSMg01no075_g04.g1 PHD_FILE: MSMg01no075_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,868,734 - 117,868,904)(118,017,049 - 118,017,293)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGCATCCGCGGAAT
TCCATCCCGTTTTCCACCTACAATCCAGTGGTACCAGACTTTCTCTCATA
GAAAAAGCAACACTGCCATGGACTTTTGTATTCATTCTATCCTGGTTTTC
AAGCCAGGGGCTCAAACTCCTCGGGGACCTTTCTAGAAAACTGTCTCCTG
GCAGAGATCTGACTTACATTTGGTGGTGTTTTACTTGGATTCCTTCTCAT
GCAACAGGAAATATCTGGGGTCATCTCAGAGACTCTCTCTGAGTACTTGG
CTGCCATGGGACAGTTAATTGTTATTCTCTCTGCCCCTCCATGTTACTCA
TGAGGGGCTTTGCAATTTGTCCGCTATCTGTGGCCGGCCTGATGTTATGC
CCGTCTTTCTATGTGCGCCCCTTTCTGCGATTCCTGGCATTGATGAACTC
ACCGATATGTTTGTACTCCCGATAATGCACTCCGTACCTTCATTCCATAG
TCACCACTCACACCCCCCCCCCAGCTCTTTTATTCCCGAGACCCCTTGCG
TAGCCCCCGCCTTTTTGCTCCCCTTTCATATCCCGCAACCTCTCTGACAT
ATTTTTTTGTCCCCGCCGTTCCTTTTCTTTTTCTTCTTTCCTGCCTTTTT
TAACTTTGGCTCTCCCTCTGTACCCTCCTTTCTTCTCACTGGAGTCACAC
CCCTGCCCCACTTTTTTTTC
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAACAACATCTGCAAGGTCTCTTTGCTTT
GCCTCTCGTGAGCAGGAGTGGATGAAGGGAAGATAGCTCATCTGTCCAAC
AATGGCTTCCTAAGCAGCTCTGTGTGAGCAACACTGTTCCAGGGGCTGAC
CACACCAGCAAACAAAGTACAAGAAACCCTCACCTAGGTGGTTTTTAGTA
GGACAAAAAACTATCAACCAAACACCAGCATGTATAAAAAAGTTAGGTGT
TATCTGAAGACATGGACGCTATATGGGAGTGATTAGAGGTCACACATGGG
AGGCCAAAGATAGTCCCGCTATGCCCCCCCTACAGGCGTAGAGCTGTGAG
CATCAGAGGGAATACTATGTGCAACAATCCTAAGGCAGGAGCTTATATGA
CATGCTGGATACATCTGCTAGCCACTGCCTATGATCCTAATGAGAAGAAA
TTAGATAATGAGACCAATGGCTAGCCAAAGCCACTCTGCTGAGGACTTTA
AGGTCATTTGGAAAAGGATTTTGACCCTTACTCTGAAAACAAGTGTAACA
TTCCCTACGAGCCTTTGCCACCCACTAACAACGCCCCCTTCCACAAAATA
CCCCCTTGTGTACCGCTTTCTAGGACACATTGAACCAGCACTCACTCTAC
TCTTACTCCTCCGCACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_g04.b1 MSMg01no075_g04.b1 CHROMAT_FILE:
MSMg01no075_g04.b1 PHD_FILE: MSMg01no075_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:02 2005
         (171 letters)



>mm_chr8_117868534_117869104
          Length = 571

 Score =  323 bits (167), Expect = 4e-93
 Identities = 170/171 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccagtggtaccagactttctctcatagaaaaagcaacactgccatggacttttgtat 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatccagtggttccagactttctctcatagaaaaagcaacactgccatggacttttgtat 260

                                                                       
Query: 61  tcattctatcctggttttcaagccaggggctcaaactcctcggggacctttctagaaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcattctatcctggttttcaagccaggggctcaaactcctcggggacctttctagaaaac 320

                                                              
Query: 121 tgtctcctggcagagatctgacttacatttggtggtgttttacttggattc 171
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtctcctggcagagatctgacttacatttggtggtgttttacttggattc 371


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 171
Length of database: 571
Length adjustment: 8
Effective length of query: 163
Effective length of database: 563
Effective search space:    91769
Effective search space used:    91769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no075_g04.g1 MSMg01no075_g04.g1 CHROMAT_FILE:
MSMg01no075_g04.g1 PHD_FILE: MSMg01no075_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:02 2005
         (245 letters)



>mm_chr8_118016849_118017493
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 241/245 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacaacatctgcaaggtctctttgctttgcctctcgtgagcaggagtggatgaagggaag 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 aacaacatctgcaaggtctctttgctttgcctcccgtgagcaggagtggatgaagggaag 386

                                                                       
Query: 61  atagctcatctgtccaacaatggcttcctaagcagctctgtgtgagcaacactgttccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagctcatctgtccaacaatggcttcctaagcagctctgtgtgagcaacactgttccag 326

                                                                       
Query: 121 gggctgaccacaccagcaaacaaagtacaagaaaccctcacctaggtggtttttagtagg 180
           ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct: 325 gggctgaccacaccagcaaacaaagtacaagaaactctcacctaggtgctttttagtagg 266

                                                                       
Query: 181 acaaaaaactatcaaccaaacaccagcatgtataaaaaagttaggtgttatctgaagaca 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 265 acaaaaaactatcaaccaaacaccagcatgtataaaaaagttaggtgtcatctgaagaca 206

                
Query: 241 tggac 245
           |||||
Sbjct: 205 tggac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)