Query= MSMg01no075_k18.b1 MSMg01no075_k18.b1 CHROMAT_FILE:
MSMg01no075_k18.b1 PHD_FILE: MSMg01no075_k18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:23 2005
(230 letters)
>mm_chr8_115565076_115565705
Length = 630
Score = 418 bits (216), Expect = e-121
Identities = 225/228 (98%)
Strand = Plus / Minus
Query: 1 ccctatttcatgctgatgagcatttctgtctcctctgctggcttgtaaaacactgcagct 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 428 ccctatttcatgctgatgagcatttctgtctcttctgctggcttgtaaaacactgcagct 369
Query: 61 tataaactaggccaactttaatgtaggtaatctagagccataaacgtttcttaacatcat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tataaactaggccaactttaatgtaggtaatctagagccataaacgtttcttaacatcat 309
Query: 121 agctgctatttagtaagtatttaataagtcagagttcaaatattgtaaaaatcaggattt 180
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 308 agctgctatttagtaagtatttaataagtcagagttcaaataatggaaaaatcaggattt 249
Query: 181 ttctatttagcatccaaagttattggctctattgactcccatcaaaat 228
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 ttctatttagcatccaaagttattggctctattgactcccatcaaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space: 137241
Effective search space used: 137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no075_k18.g1 MSMg01no075_k18.g1 CHROMAT_FILE:
MSMg01no075_k18.g1 PHD_FILE: MSMg01no075_k18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:23 2005
(492 letters)
>mm_chr8_115431227_115432119
Length = 893
Score = 884 bits (457), Expect = 0.0
Identities = 484/493 (98%), Gaps = 1/493 (0%)
Strand = Plus / Plus
Query: 1 cccc-tctgtggatcaaacatttatttggaagaagtcagcacatggcgttctacaaatcc 59
|||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 201 ccccttctgtggatcaaacatttatttgggagaagtcagcacatggcgttctaaaaatcc 260
Query: 60 acctgttttattgactgcagagtgaattaaacttgcaagcagagacaagtttgagaagag 119
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 acctgttttattgactgcagagtgaattaagcttgcaagcagagacaagtttgagaagag 320
Query: 120 aatatgagcatgagttatgtctatgtacatatcgacaggatgccattctgcaccccataa 179
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatatgagcgtgagttatgtctatgtacatatcgacaggatgccattctgcaccccataa 380
Query: 180 tcatagacatattagggagccctgccaacaggatttggtgcctaaattgagatcttgagg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatagacatattagggagccctgccaacaggatttggtgcctaaattgagatcttgagg 440
Query: 240 aagtgtgaaacttcatcagccgtgggacagattcaggcaaaagacttattgatgccctga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aagtgtgaaacttcatcagccgtgggacagattcaggcaaaagacttattgatgccctga 500
Query: 300 agccctttcgagtcatgaagctatctatcacctcaatcggctgtatcgccaccagaagct 359
|||||||||||||||||||||||||||||||||||||||||||||| | || |||||||
Sbjct: 501 agccctttcgagtcatgaagctatctatcacctcaatcggctgtattggcaggagaagct 560
Query: 360 gtttgaaacttgtcctctcagaataattacagccttgtagttcctgtttggaaggaggct 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtttgaaacttgtcctctcagaataattacagccttgtagttcctgtttggaaggaggct 620
Query: 420 gtgatcaatggtgaaaccccacaacttcatttcaggtttagccgggaagttaatggtagc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgatcaatggtgaaaccccacaacttcatttcaggtttagccgggaagttaatggtagc 680
Query: 480 cattttgcccatt 492
|||||||||||||
Sbjct: 681 cattttgcccatt 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 893
Length adjustment: 10
Effective length of query: 482
Effective length of database: 883
Effective search space: 425606
Effective search space used: 425606
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
