BAC Information

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BAC

Clone NameMSMg01-075L06
Chromosome8 (Build37)
Map Location 35,507,006 - 35,507,240
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66, LOC619780, LOC666718, EG234159
Downstream geneLOC666746, Dusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075L06.T7 (MSMg01no075_l06.b1)MSMg01-075L06.TJ (MSMg01no075_l06.g1)
ACCAG298456AG298457
length714749
length of high quality
(start - end)
79 (83 - 161)235 (134 - 368)
definitionCHROMAT_FILE: MSMg01no075_l06.b1 PHD_FILE: MSMg01no075_l06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:26 2005CHROMAT_FILE: MSMg01no075_l06.g1 PHD_FILE: MSMg01no075_l06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGGNNAAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGG
ATCCGCGGAATTCCAGTGTTTAACCACCTCATATTCCCTCCATAACTTTC
TAGTTCCATGGTCCTGTTAAAGAGCCTCTTGGAGTATAATGTACTGGTGA
CTGTATATACACAAGTAGGGCCAGAAAACAGCCCAGGTATTGATTGTTTT
ATGAGTGGAACTTTGCGTGGTCTGCATTGTCTCTGTGTGAGTATGTGTCT
TAGTTAGGGTTTTGTTGCTATGAAGAGACACTGTTATCTACTGTCAAATG
GAGAAGGTTTAACTGGAGCTGTACTTACAGGCCACTAGGTTTAGTCCATT
ACTGTCAAGATGGGAAGTATGGAGTTTATATTTACACATCTTGCTGGATA
TGTATATAATTAATTCTATTACTGTATCTGCCAGCAACTATAATATACAG
AGAACCTTTATATTTGGTTTTATGTATTTGTAAATTTCAAATCTCAATTA
ACTCTTTATTTCCCTCCAACTTTTTTCTATACACATCACGGCCACATTTA
CTCACACATCCTCCTCCTACCAATCTCCTTTTACACCCCCCTTATTCCTT
CTAACCCCCTATATCATAACCCCCCCTCTTTTCTGTCTATTCCTCCCCTA
TCTCTTCCACATATACTCCTTTACCACTAATCTACCTTCCTACTTTCTGC
TTTCTCTACCATTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCNNNCCGTAAA
ATANNTCACTATGAATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAGTGTTACCTCTTCAC
ATAATGACACTTTTAGACATATGAAGGAGTCAAGCAGTAATAGTTAGTAT
GTTGATTTAGCCCAGCCCACAGGCAGAGATTCAGGTTCCTAGGAAAGAGA
CAAGAGGAAATCCTAACAGCTCTCAAGCCAGAGCAGAAACCTAATCACAG
ACTTTGGATTGAAAACCAAGACCAAAACCAGTTTTGATTTCTAGCGAGCA
TTATTGAGCATCAGTAGAAGGTAGCTTGGAAGCTACTAGTGTGGGGGGGT
CTGCTGTCAGAACTGGAGCTTCTCCTGAGCTGGCGCATTGAGGTGTCATG
CACTTCCTCTCACGAAACTGAGTCTAGGCGGCTTGAAATTTTGAACCTGT
CCCTAGATCATTCCAGACGGAAATTTCTTTCAAAGGCGGTCTAAACACAC
ATTTACTTCTCTAATTCAGAACCGACATTGAAAGATTATGTTAACTCCGT
TCTGTCTTTTCTTGTTGTGGTAACCTTAGGTACTTAGTCCTAATAATTCT
TACACTGATGCCTTATTCTTTTATCAGGCTAATGTCTACCACTTTTAGTG
CGCCTCCTGTCCTCGCTCTTTTTTGATCTCCCTTTAATTTATCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_l06.g1 MSMg01no075_l06.g1 CHROMAT_FILE:
MSMg01no075_l06.g1 PHD_FILE: MSMg01no075_l06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:26 2005
         (235 letters)



>mm_chr8_35506806_35507440
          Length = 635

 Score =  455 bits (235), Expect = e-132
 Identities = 235/235 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgttacctcttcacataatgacacttttagacatatgaaggagtcaagcagtaatag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 tagtgttacctcttcacataatgacacttttagacatatgaaggagtcaagcagtaatag 376

                                                                       
Query: 61  ttagtatgttgatttagcccagcccacaggcagagattcaggttcctaggaaagagacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttagtatgttgatttagcccagcccacaggcagagattcaggttcctaggaaagagacaa 316

                                                                       
Query: 121 gaggaaatcctaacagctctcaagccagagcagaaacctaatcacagactttggattgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gaggaaatcctaacagctctcaagccagagcagaaacctaatcacagactttggattgaa 256

                                                                  
Query: 181 aaccaagaccaaaaccagttttgatttctagcgagcattattgagcatcagtaga 235
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaccaagaccaaaaccagttttgatttctagcgagcattattgagcatcagtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)