BAC Information

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BAC

Clone NameMSMg01-075P21
Chromosome8 (Build37)
Map Location 115,143,169 - 115,143,763
singlet/doubletsinglet
Overlap geneCntnap4
Upstream geneZnrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498, LOC100042040
Downstream geneLOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P21.T7 (MSMg01no075_p21.b1)MSMg01-075P21.TJ (MSMg01no075_p21.g1)
ACCAG298676AG298677
length667673
length of high quality
(start - end)
171 (43 - 213)595 (77 - 671)
definitionCHROMAT_FILE: MSMg01no075_p21.b1 PHD_FILE: MSMg01no075_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:48 2005CHROMAT_FILE: MSMg01no075_p21.g1 PHD_FILE: MSMg01no075_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGGAATT
CATCCATCTGGCTTAAGTTGACCTCTGACCCTTTGATTGTCATTTTTCTG
TCACCCTTTACCAGCTCCTCTGGCAGACCCCAGTAATCATCTGCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTATCTCGCTTCTGAGACTGATCATGCATCACCGCTATTGT
GAGCTCTCTTGTGGTGAACATGGGAAGGCTGATATCTTGGTGACATACTG
ACTATATTTTCTCTGGGAAATGAAAACTAGGAAATGATGGGACAGAAAAA
CGTTCTGGATAAATTGGGAGAGAAATCTCCATACTTGTTGCAACAAGGAG
TGTACCAATTTGCCCCCCCACCACAGTGTGCAAGAGATTCTTCTCTATAT
CTCAGATTTTGACAAAACCTACCTATCATTGTATTGATAATAACACTTCT
TTGGGGAAGATGAGATGGATAAGCCCTTAAAGGGGATTGACAAAAAGACC
GACGAACTGAGTATGAGCATCAAGACCCGAGTGATGAAAAAAAAGAAGCA
ATTAATAATTGCGACCACCGTTGGATGAGAAAGGGAAAGTAAATAGTACC
ATGTAAAAAAAAAAAAC
NNAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATGTAGCATTTTTAACAAGAAGC
ACTGGCTACTTGGATAATATCTCAGGGGACCCATCTTTTTAAGTAAGGAT
GTGTGTCCTGAATACCTGGAAAATAGAACTTGGGTGTCTTTACTTAAGCA
CTGTAAGTTGGATGAGAATAAGTACAATGATTTAGGGCAAAAAGAATAGC
CACACAATTCTGCAAGGGGTGTTAGAATAATCCATCTCACAGTAAACAGA
GAATGGGAGTTACCTCTGTCAGTTCACCAGGTAAATAATTTCTCTACATA
CAGATGTCTGACTTTTAACAACAAATCCTACAGCGGTGAGAAAATGTTGC
TTATTTAGCGTAGAAAGACTCCACTGCGGTAAGGAAACTAACAATGAACA
GGCAAAAACACCTATTATTCTTTAAACCTTCTGATCTTACAGACTCAATC
ATGAAGCAATCGGCGTACTTCAACACAGTGTATGAGTTTACATCCCTGTG
CTGAAATACTTTATTTTCACTCTATACAATCATTGGACTCACGACTTGCT
GCTTTGGCTATATTCACAAGTCTGTTGGTTTGCAAAGGACCCATCTTGTG
AAATGCTATGGCCAGATGAAGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p21.g1 MSMg01no075_p21.g1 CHROMAT_FILE:
MSMg01no075_p21.g1 PHD_FILE: MSMg01no075_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:48 2005
         (595 letters)



>mm_chr8_115142969_115143963
          Length = 995

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgtagcatttttaacaagaagcactggctacttggataatatctcaggggacccatct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 tatgtagcatttttaacaagaagcactggctacttggataatatctcaggggacccatct 736

                                                                       
Query: 61  ttttaagtaaggatgtgtgtcctgaatacctggaaaatagaacttgggtgtctttactta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 ttttaagtaaggatgtgtgtcctgaatacctggaaaatagaacttgggtgtctttactta 676

                                                                       
Query: 121 agcactgtaagttggatgagaataagtacaatgatttagggcaaaaagaatagccacaca 180
           |||||||||||||| ||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 675 agcactgtaagttgtatgaggataagtacaatgatttaggacaaaaagaatagccacaca 616

                                                                       
Query: 181 attctgcaaggggtgttagaataatccatctcacagtaaacagagaatgggagttacctc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 615 attctgcaaggggtgttagaataatccatctcacagtaaacagagaatgggagtcacctc 556

                                                                       
Query: 241 tgtcagttcaccaggtaaataatttctctacatacagatgtctgacttttaacaacaaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tgtcagttcaccaggtaaataatttctctacatacagatgtctgacttttaacaacaaat 496

                                                                       
Query: 301 cctacagcggtgagaaaatgttgcttatttagcgtagaaagactccactgcggtaaggaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct: 495 cctacagcggtgagaaaatgttgcttatttagcgtagaaagactccattgtggtaaggaa 436

                                                                       
Query: 361 actaacaatgaacaggcaaaaacacctattattctttaaaccttctgatcttacagactc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 actaacaatgaacaggcaaaaacacctattattctttaaaccttctgatcttacagactc 376

                                                                       
Query: 421 aatcatgaagcaatcggcgtacttcaacacagtgtatgagtttacatccctgtgctgaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatcatgaagcaatcggcgtacttcaacacagtgtatgagtttacatccctgtgctgaaa 316

                                                                       
Query: 481 tactttattttcactctatacaatcattggactcacgacttgctgctttggctatattca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tactttattttcactctatacaatcattggactcacgacttgctgctttggctatattca 256

                                                                  
Query: 541 caagtctgttggtttgcaaaggacccatcttgtgaaatgctatggccagatgaag 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 caagtctgttggtttgcaaaggacccatcttgtgaaatgctatggccagatgaag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space:   576225
Effective search space used:   576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)