BAC Information

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BAC

Clone NameMSMg01-075P24
Chromosome8 (Build37)
Map Location 68,111,331 - 68,111,850
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-075P24.T7 (MSMg01no075_p24.b1)MSMg01-075P24.TJ (MSMg01no075_p24.g1)
ACCAG298682AG298683
length683673
length of high quality
(start - end)
527 (73 - 599)459 (73 - 531)
definitionCHROMAT_FILE: MSMg01no075_p24.b1 PHD_FILE: MSMg01no075_p24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:49 2005CHROMAT_FILE: MSMg01no075_p24.g1 PHD_FILE: MSMg01no075_p24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:24:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTAAAAATACTATAATTGCGGCGCTAATACGACTCCTATATCCGAGGAC
CGCGGAATTCAGGCACTTGCGAGCCTCAGACTAGATACTGGTGCTGGGAA
TCACACTGGGTTCTCTGTAAGAGTAGTGCATGCCTTTCTCCACTAGGCCA
TCTCATCTCTAGTGCCACACCTGGCGTCTGTAAGTGCTGGCAGTTTAGGC
CCTCATGATTGCATAGCAGGAGATCTTACCTACTGAGTCATCACCCAGCC
TCAGTTTGAATTAAACTACTGATGCTCTGGCAACTAAGATGCTAGGACAT
TATTTCCTAGCATCTTATTAATCATTAGTTTTTAAAATGAAAATCTTCAT
CTCTCGGATCCAGTGGTAGAACTGCTTGCTGTAGAGGGAGATTAAAAGGA
GGTATTCTTACTCTAGATACATTTACTTTAATCCAGATATCAGAGAGAAT
ACCATTGCTTCTAAAATGGTCTGGTTAATGCAAAAAACACAGTATACATT
TAAGGTAAGTCTATCATATTTAAATACTCAACCCAAGGGGATTATTAATG
ACAAAGCTAGCTATTGACCGTTTCAGAGGCTATTTCTATATTGACATGTA
ACAGTGAAGAAAGCAGCTTTATACATGGAGGAAAAGACTGAGAAAAGTGA
GTAACATACTTACAGGATCCATAAGGAATGTAG
AATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCC
GTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGT
TGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTANAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCAAATACCTAGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no075_p24.b1 MSMg01no075_p24.b1 CHROMAT_FILE:
MSMg01no075_p24.b1 PHD_FILE: MSMg01no075_p24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:24:49 2005
         (527 letters)



>mm_chr8_68111124_68112050
          Length = 927

 Score =  936 bits (484), Expect = 0.0
 Identities = 511/520 (98%)
 Strand = Plus / Plus

                                                                       
Query: 8   actagatactggtgctgggaatcacactgggttctctgtaagagtagtgcatgcctttct 67
           ||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 actagatgctggtgctggtaatcacactgggttctctgtaagagtagtgcatgcctttct 267

                                                                       
Query: 68  ccactaggccatctcatctctagtgccacacctggcgtctgtaagtgctggcagtttagg 127
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 268 ccactaggccatctcatctctagtgccacacctggcttctgtaagtgctggcagtttagg 327

                                                                       
Query: 128 ccctcatgattgcatagcaggagatcttacctactgagtcatcacccagcctcagtttga 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 ccctcatgattgcatagcaggagatcttacctactgagtcatcacccagcctcagtttga 387

                                                                       
Query: 188 attaaactactgatgctctggcaactaagatgctaggacattatttcctagcatcttatt 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 attaaactactgatgctctggcaactaagatgctaggacattatttcctagcatcttatt 447

                                                                       
Query: 248 aatcattagtttttaaaatgaaaatcttcatctctcggatccagtggtagaactgcttgc 307
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 448 aatcattagtttttaaaatgaaaatcttcatctctcggatccaatggtagaactgcttgc 507

                                                                       
Query: 308 tgtagagggagattaaaaggaggtattcttactctagatacatttactttaatccagata 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 tgtagagggagattaaaaggaggtattcttactctagatacatttactttaatccagata 567

                                                                       
Query: 368 tcagagagaataccattgcttctaaaatggtctggttaatgcaaaaaacacagtatacat 427
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 568 tcagagagaatatcattgcttctaaaatggtttggttaatgcaaaaaacacagtatacat 627

                                                                       
Query: 428 ttaaggtaagtctatcatatttaaatactcaacccaaggggattattaatgacaaagcta 487
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 ttaaggtaagactatcatatttaaatactcaacccaaggggattattaatgacaaagcta 687

                                                   
Query: 488 gctattgaccgtttcagaggctatttctatattgacatgt 527
           ||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 688 gctcttgacagtttcagaggctatttctatattgacatgt 727


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)