BAC Information

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BAC

Clone NameMSMg01-076C08
Chromosome8 (Build37)
Map Location 108,179,321 - 108,179,694
singlet/doubletsinglet
Overlap geneCtcf
Upstream geneEG637550, LOC382052, LOC100041473, Ces6, LOC628050, 4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100
Downstream geneEG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2, Ranbp10, Tsnaxip1, Cenpt, LOC100041617, Thap11, Nutf2, Edc4, Nrn1l, Pskh1, Ctrl, Psmb10, Lcat, Slc12a4, Dpep3, Dpep2, Ddx28, Dus2l, Nfatc3, Rbm35b, Lypla3, Slc7a6, Slc7a6os, Prmt7, Smpd3, Zfp90, 6030452D12Rik, Cdh3, LOC100042734, Cdh1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-076C08.T7 (MSMg01no076_c08.b1)MSMg01-076C08.TJ (MSMg01no076_c08.g1)
ACCAG298792AG298793
length717696
length of high quality
(start - end)		481 (46 - 526)247 (56 - 302)
definitionCHROMAT_FILE: MSMg01no076_c08.b1 PHD_FILE: MSMg01no076_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:01 2005CHROMAT_FILE: MSMg01no076_c08.g1 PHD_FILE: MSMg01no076_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTAGGACAGCCACCGCTATACAGAGAAATCCTGTCTTAAAAAAAAC
AAAAAACAAAAAAACAAAACCAAGATCACCCTCGCTTACATAGAAAGGTC
TCAAGTACATCCCAAGCTACATAACACCTGTTTGAAAATAAAACAAGTTT
TGTTTTTGAGACAGGGTTTCTCTGTATAATAGCCCTAGGCGTCTTGGAAC
TCGCTCTGTAGACCAGGTCTGCCCTGAACTCAGGGATCTATCTATCTGCC
TCTGCCTCTGCCTCTGCCTCTGCCTCCAGAGGCTTGTGCCACCACTCCAG
CTCAAATAATTTTTAAGGGGAAAAAAATTAGCAACTAAACCATTATCCCA
TCAACTTCTAGACAGAAGAGGGAGGGGGAGCTTCCTTTAGATTGAGCAAG
TGAGATCGTAGACAATTGGGGGTGAAGGGTTAGAAGAAGGAAAACTGGTT
CAAATAGTTTTGTGACCTTTGACAGAGTGGATACAAGGACCTAACTCTAA
CTGAAGACATCTGAAATGTCCTAACTTAACTATATATCCCTCATGCAGCC
TGCTAAATCAATCCCCTTTAGCCCTCTCTTGGCTTTTCTCTCACCTCTCT
GCTGTCCAAAAATCTCCCACCTTCATTCTCATTTCACCGTGTACTCTTTA
TCAGGCATTTTCTGTAT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGCAATA
TAAGAAATCTGCCTGCCTCTGCTTCCCTACTGCTAGGATGAACTGACAAT
GACCATCTATAGGTTTCATGTGTACACTCATCTGTACACATACATGATAC
ACACACACACACACACACACACACACACACACACACACACACACACACAC
GAGCAAAAGATAGAAAGAAAAAGAAACAAAAGGAAAGTAAAAGTCCACTC
TTCTATTTCCTGCTTACAATCCTCAAGTCTTCCTTCTCGCAGAGAAGCTG
CTAAATGCCTTACTGTGAAATTGGAATTGAAGCCATCAGTCTTCAAGACA
CCGCCAGCCTGCTAACTGCAGCTGATCTTTGCGCTTAACTGGTCACCCTC
CCATTCCTGAAAAGACTCAGTCCCTCCACCCTAGCTAGGCAGGCTCTCTT
GGCTCTGAGAACTGCCAGAGGCGCCTCCTGGGTGGAGGTTGGGGGAGCTC
ATCCTATTTGGGCCTCAGCTAGCAGAACCGAAACCTGTGGCAATATCACT
TCATCCAGAAAACCTCGCCCTGAGCTTCAAAGTAGAGAGTGCCTCCGTCC
CAGAGCTCTAGGGGACCCTGGCTTTCTTTCTGTCACGGGCTTCTGTTACT
TTGTTACATCGATCTGAATCAGGCCCGCTCCTCCCGCCAGATCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no076_c08.b1 MSMg01no076_c08.b1 CHROMAT_FILE:
MSMg01no076_c08.b1 PHD_FILE: MSMg01no076_c08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:01 2005
         (481 letters)



>mm_chr8_108178814_108179694
          Length = 881

 Score =  658 bits (340), Expect = 0.0
 Identities = 371/394 (94%), Gaps = 20/394 (5%)
 Strand = Plus / Minus

                                                                       
Query: 88  cgcttacatagaaaggtctcaagtacatcccaagctacataacacctgtttgaaaataaa 147
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 881 cgcttacatagaaaggtctcaagtacatcccaagctacataacacctgtttgaaaataaa 822

                                                                       
Query: 148 acaagttttgtttttgagacagggtttctctgtataatagccctaggcgtcttggaactc 207
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 821 acaagttttgtttttgagacagggtttctctgtataatagccctaggcgtcttggaactc 762

                                                                       
Query: 208 gctctgtagaccaggtctgccctgaactcagggatctatctatctgcctctgcctctgcc 267
            ||||||||||||||||||||||||||||||||||||||||||||               
Sbjct: 761 actctgtagaccaggtctgccctgaactcagggatctatctatct--------------- 717

                                                                       
Query: 268 tctgcctctgcctccagaggcttgtgccaccactccagctcaaataatttttaaggggaa 327
                 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 716 -----atctgcctccagaggcttgtgccaccactcgagctcaaataatttttaaggggaa 662

                                                                       
Query: 328 aaaaattagcaactaaaccattatcccatcaacttctagacagaagagggagggggagct 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 aaaaattagcaactaaaccattatcccatcaacttctagacagaagagggagggggagct 602

                                                                       
Query: 388 tcctttagattgagcaagtgagatcgtagacaattgggggtgaagggttagaagaaggaa 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tcctttagattgagcaagtgagatcgtagacaattgggggtgaagggttagaagaaggaa 542

                                             
Query: 448 aactggttcaaatagttttgtgacctttgacaga 481
           ||||||||||||||||||||||||||||||||||
Sbjct: 541 aactggttcaaatagttttgtgacctttgacaga 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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