Query= MSMg01no076_h03.b1 MSMg01no076_h03.b1 CHROMAT_FILE:
MSMg01no076_h03.b1 PHD_FILE: MSMg01no076_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:25 2005
(543 letters)
>mm_chr8_125214098_125215037
Length = 940
Score = 911 bits (471), Expect = 0.0
Identities = 522/541 (96%), Gaps = 5/541 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgacctttct-cggattccctgtgcaggcccaagcccgtatttagcacatggt 62
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ggaattctgacctttctgtggattccctgtgcaggcccaagcccgtatttagcacatggt 681
Query: 63 cagttggggaggggttgcccattccagaagccagtggttctgtggcactttttaacattg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagttggggaggggttgcccattccagaagccagtggttctgtggcactttttaacattg 621
Query: 123 ggcaggcgtggcctctagagattactcgtttgaatgattacaaaatggccttgcttagtt 182
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 620 ggcaggcgtggcctctagagattactcgtttgcatgattacaaaatggccttgcttagtt 561
Query: 183 tggtcacacaagaacttcggctgtttctctctgggtggacgaccagcaatgacccagggt 242
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 560 tggtcacacaagaacttcggctgtttctctctgggtgga----cagcaatgacccagggt 505
Query: 243 atgaagttctcatgggtgagttaggcttgtaatttcaccactgagtcacacagatcaagg 302
|||||||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||
Sbjct: 504 atgaagttctcatgggtgagttaggcttgtaaattcaccattgagtcatacaggtcaagg 445
Query: 303 tcagagcctctcactcgccacgcaaaggcatgcactggcaagtgccacacaccacatagg 362
||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 444 tcagagcctctcactcgacacgcaaaggcacgcaccggcaagtgccacacaccacatagg 385
Query: 363 agatatggcaagatcaaagcagcagcacacagggactgttatctaggtcagcatcgtgtg 422
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 384 agatatggcaagatcaaagcagcagcacacagggactgatatccaggtcagcatcgtgtg 325
Query: 423 acaagtattgttctgaaccagtagctggacagaggaccttggtgagggtgctctgtgaag 482
||||||| |||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 324 acaagtactgttctgaaccagtggctggacagagggccttggtgagggtgctctgtgaag 265
Query: 483 aatgggcagaagagtggatgtatgtttgatgtatgtatgatgtgtgtataaatatgtaca 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aatgggcagaagagtggatgtatgtttgatgtatgtatgatgtgtgtataaatatgtaca 205
Query: 543 g 543
|
Sbjct: 204 g 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 940
Length adjustment: 10
Effective length of query: 533
Effective length of database: 930
Effective search space: 495690
Effective search space used: 495690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no076_h03.g1 MSMg01no076_h03.g1 CHROMAT_FILE:
MSMg01no076_h03.g1 PHD_FILE: MSMg01no076_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:25:25 2005
(362 letters)
>mm_chr8_125047113_125047874
Length = 762
Score = 677 bits (350), Expect = 0.0
Identities = 359/362 (99%)
Strand = Plus / Plus
Query: 1 agcagctagaagctgcgcgctgggagtccggagtcaatgaagcctagtggccacacctgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcagctagaagctgcgcgctgggagtccggagtcaatgaagcctagtggccacacctgc 260
Query: 61 caccccccaggaaggctgaaagcaaaaacttaagccaaaccaggcccagaaggctctggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caccccccaggaaggctgaaagcaaaaacttaagccaaaccaggcccagaaggctctggc 320
Query: 121 caatcccccttcctggaagaggagggttggtacagtcagctgagggcacatgaggaagcc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caatcccccttcctggaagaggagggttggtacagtcagctgagggcacatgaggaagcc 380
Query: 181 agctgcccggacttgttcctaaagcgtgggactaacgctcctagactgggttagcctggg 240
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct: 381 agctgcccggacttgttcctaaagcttgggactaaggctcctagactgggttagcctggg 440
Query: 241 cagtgtggctggatatcttagcacctttgatcaggcccaggtgcagccagcaggaaagag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagtgtggctggatatcttagcacctttgatcaggcccaggtgcagccagcaggaaagag 500
Query: 301 ggtcagtcaagcctaaggtgcattttgttcctttgaagctgtcctcacttgtcacttcta 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 ggtcagtcaagcctaaggtgcattttgctcctttgaagctgtcctcacttgtcacttcta 560
Query: 361 ca 362
||
Sbjct: 561 ca 562
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 362
Length of database: 762
Length adjustment: 9
Effective length of query: 353
Effective length of database: 753
Effective search space: 265809
Effective search space used: 265809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
