Query= MSMg01no078_a20.b1 MSMg01no078_a20.b1 CHROMAT_FILE:
MSMg01no078_a20.b1 PHD_FILE: MSMg01no078_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:15 2005
(559 letters)
>mm_chr8_24811192_24812150
Length = 959
Score = 812 bits (420), Expect = 0.0
Identities = 463/484 (95%), Gaps = 14/484 (2%)
Strand = Plus / Minus
Query: 1 catggccaggacaacaataagcacatattgtcaataataagaaaatgtgagacaggtgtg 60
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 477 catggccaggacaacaataggcacatattgtcaataataagaaaatgtgagacaggcgtg 418
Query: 61 tatacaaagtttcttctatggtactcacaatgtctgatatgcagaagattgccaggagcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 tatacaaagtttcttctatggtactcacaatgtctgatatgcagaagattgccaggagcc 358
Query: 121 aaccatgactgtaagtcttgttcttcactgaacacctagacatctgctttgctcccacgg 180
|||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
Sbjct: 357 aaccatgactgtaagtcttgttcttcactgaacacccagccatctgctttgctcccacag 298
Query: 181 cagcccgttagctctttgtcctggagctcacttcctgatctttggattgccatccttgag 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 297 cagcccgttagctctttgtcctggagttcacttcctgatctttggattgccatccttgag 238
Query: 241 gatcttttttt------ttcctccctcagtggctctgggttcactactccaaaaggacta 294
|||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 gatc------tccacagttcctccctcagtggctctgggttcactactccaaaaggacta 184
Query: 295 caggagattaaacattctacatccctaaatacagcgcctccgtatattttgagccgcttt 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 caggagattaaacattctacatccctaaatacagcgcctccgtatattttgagccgcttt 124
Query: 355 tcctgggaaatttcagacagcagtgacgctccgcaaagctggccttttagaaagcatatg 414
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 123 tcctgggaaatttcagacagcagtgacactccgcaaagctggccttttagaaagcatatg 64
Query: 415 ggcatggctaaagtaaatctacatcagtaaattgcctggattaggaag-agggctgctct 473
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 63 ggcatggctaaagtaaatctacatcagtaaattgcctggattaggaagca-ggctgctct 5
Query: 474 agat 477
||||
Sbjct: 4 agat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no078_a20.g1 MSMg01no078_a20.g1 CHROMAT_FILE:
MSMg01no078_a20.g1 PHD_FILE: MSMg01no078_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:15 2005
(625 letters)
>mm_chr8_24662890_24663914
Length = 1025
Score = 1125 bits (582), Expect = 0.0
Identities = 615/626 (98%), Gaps = 1/626 (0%)
Strand = Plus / Plus
Query: 1 tctgggattttgtccaactcactctcagctatttccacagaattagtaaaaatttggaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggattttgtccaactcactctcagctatttccacagaattagtaaaaatttggaag 260
Query: 61 aatgacattgtctttatttcttgtgttggggtttacacatctagaattatttccttattt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacgacattgtctttatttcttgtgttggggtttacacatctagaattatttccttattt 320
Query: 121 aagttatttatattattttgggtcaagtgtttgcaaaaggagtagagttgaagtgtttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagttatttatattattttgggtcaagtgtttgcaaaaggagtagagttgaagtgtttac 380
Query: 181 ttcagaaaatggttcctccatccgggaactcaggagctatggactctctgaatagaacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcagaaaatggttcctccatccgggaactcaggagctatggactctctgaatagaacat 440
Query: 241 taacatcaagattaaccacagctgttgactaataccactatacaaatgtcctagccaatc 300
||||||||||||||| ||||||| |||||||||| |||||||||||||||||||||||||
Sbjct: 441 taacatcaagattaatcacagcttttgactaatatcactatacaaatgtcctagccaatc 500
Query: 301 aacaacagtggctttcacgcttatctgtacaaagactgtcttgtattttctataaggttt 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 501 aacaacagtggctttcacgcttatctgtacaaagactgtcttgtgttttctataaggttt 560
Query: 361 acctgggaacttataaagtcctgtagtttaacactatatttacatattgtcctatgcatg 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 561 acctgggaacttataaagtcctgtagtttaacactatatttacatattgtcctatgtatg 620
Query: 421 tagctgagactcaaatgtcttttattaaggaggtgttctgcaatactatcttttaatttt 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 621 tagctgagactcaaatgtcttttattaaggaggtgttctgcaatactatcttctaatttt 680
Query: 481 tttattttgtatttttgaggctctaactacattttccccttccctttcctccctccaa-t 539
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 681 tttattttgtatttttgaggctctaactacatttttcccttccctttcctccctccaaat 740
Query: 540 cttttcatatatccccatgttctccttcacattcacagctcataaggagctaagtaaatt 599
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 741 cttctcatatatccccatgttctccttcacattcacagctcataaggagctgagtaaatt 800
Query: 600 gtttaaagtatgtaaaagatgaggct 625
||||||||||||||||||||||||||
Sbjct: 801 gtttaaagtatgtaaaagatgaggct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space: 624225
Effective search space used: 624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
