BAC Information

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BAC

Clone NameMSMg01-078I16
Chromosome8 (Build37)
Map Location 44,966,244 - 44,966,693
singlet/doubletsinglet
Overlap genenone
Upstream geneTriml1, LOC622082, EG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-078I16.T7 (MSMg01no078_i16.b1)MSMg01-078I16.TJ (MSMg01no078_i16.g1)
ACCAG299852AG299853
length695696
length of high quality
(start - end)
450 (65 - 514)344 (71 - 414)
definitionCHROMAT_FILE: MSMg01no078_i16.b1 PHD_FILE: MSMg01no078_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:53 2005CHROMAT_FILE: MSMg01no078_i16.g1 PHD_FILE: MSMg01no078_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:26:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAGAGGACCGCGGA
TTCTCCATGGCCGACTAATTTCAATACATTTTCATTTCTAGACTACACAT
ACCGTATATCTAACTATGTTAATTATACATGTCCTGTTGAGCTGGATCTG
CTGTTGTTTGCTTAAACCCTGTATTCTCAGATGATTAATAAATTAAATAA
AAAGCTCTTCTAATATTTCTAAGCAAATTTAGAAATTGACATAAAGTCAT
AAACATTATTCTTGTGACTCTTTATAATTGCCAAGTGAGTCAGTCCCCAT
TAAACAACAACCTCTTAGAAGAGGCATTCGAAGGCTGCAGAAAATCCTTC
CATGGCACATTTTGTCAAAGAAATGCCTCGATGCAAATTGGAGTTGACCT
ATAGCTGATGATCTGTTTTGACTGCATAAACCCAGTGCCTCGATGTTGGC
GATCTTGACAGCCCAACAATTCATTTTCCGTTCCTTTCAGACTTCTTTTA
TTTCTAATTTGCAGAACGGATATGGTATTTTATTTCCTGCTTTCTATGGA
CTCTAAAGTCATAAAACTGCACAGAGGTACTATATTTCCCTACAATAAAA
TGTCATTTTTTTACAGGTTAAATGAGAGTAAAAACGAGACTGCCTCTTAT
GGCTGTTGTCTCTGGATCCAGGGTTTGAAAGGTATATTACGCTAN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGAGGTACAAATAATGACTGCTATGACA
AGACATGCCTACTGGAGCAGTAATTACCAAACATCATGGAAATAATAGAA
AAATTTCAGATTGGATTTATGTCCCACTCCATAAGATAAGCCCATATCTG
ACAACATTATTGGACCAAAGCCAGTTGCTCCAGAAGTCAAAGTCCCAAGA
AAAACCTGCTATTATTGTTTAGCTAAATGGATAATATATTGATATGACTC
CTAATATCTTTTCATTACTCAATATCTAAATGCTTCTCTTGACCCTCCTC
AGAGGTTTCTACTTGCATTTGATGGTGATTAACACAGAGACATACAAGTG
GTCATGGTGCAGAGATAAGAGACTATAGAACACTAAGTAAAAAATGGAAC
TTAGATGCCACCTCACCTCTTTGCAAGGCCAGGAGTCATTGTGGAAGAGG
GGCCAGAAAGAGTTTAAGAGCCACAGGTGGTAGATGACTGACCATAAAGA
GCTAGTTTCTTCTGTACACAGTAATGCAGCTTGCCATATGATGGCAACTT
CCCGCACTTGAAACAGCTTGAATATTACCTGTTCTATCCCCAGTCCGGCT
AATTTCCTTCATGGTGATGGAAATTGAACATGCAACCCCTCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no078_i16.b1 MSMg01no078_i16.b1 CHROMAT_FILE:
MSMg01no078_i16.b1 PHD_FILE: MSMg01no078_i16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:26:53 2005
         (450 letters)



>mm_chr8_44966044_44966896
          Length = 853

 Score =  793 bits (410), Expect = 0.0
 Identities = 440/450 (97%), Gaps = 3/450 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaatttc-aatacatttt-catttctagactac-acataccgtatatctaactatgtta 57
           |||||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct: 650 ctaatttcaaatacattttccatttctagactacaacataccgtatatctaactatgtta 591

                                                                       
Query: 58  attatacatgtcctgttgagctggatctgctgttgtttgcttaaaccctgtattctcaga 117
           |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 590 attatatatgtcctgttgagctggatccgctgttgtttgcttaaaccctgtattctcaga 531

                                                                       
Query: 118 tgattaataaattaaataaaaagctcttctaatatttctaagcaaatttagaaattgaca 177
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 530 tgattaataaattaaataaaaagctcttttaatatttctaagcaaatttagaaattgaca 471

                                                                       
Query: 178 taaagtcataaacattattcttgtgactctttataattgccaagtgagtcagtccccatt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 470 taaagtcataaacattattcttgtgactctttataattgccaagtgagtcagtctccatt 411

                                                                       
Query: 238 aaacaacaacctcttagaagaggcattcgaaggctgcagaaaatccttccatggcacatt 297
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 aaacaacaacctcaaagaagaggcattcgaaggctgcagaaaatccttccatggcacatt 351

                                                                       
Query: 298 ttgtcaaagaaatgcctcgatgcaaattggagttgacctatagctgatgatctgttttga 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ttgtcaaagaaatgcctcgatgcaaattggagttgacctatagctgatgatctgttttga 291

                                                                       
Query: 358 ctgcataaacccagtgcctcgatgttggcgatcttgacagcccaacaattcattttccgt 417
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 ctgcataaacccagtgtctcgatgttggcgatcttgacagcccaacaattcattttccgt 231

                                         
Query: 418 tcctttcagacttcttttatttctaatttg 447
           ||||||||||||||||||||||||||||||
Sbjct: 230 tcctttcagacttcttttatttctaatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 853
Length adjustment: 10
Effective length of query: 440
Effective length of database: 843
Effective search space:   370920
Effective search space used:   370920
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)