BAC Information

Click to search

BAC

Clone NameMSMg01-079F12
Chromosome8 (Build37)
Map Location 10,380,251 - 10,527,990
singlet/doubletdoublet
Overlap geneMyo16
Upstream geneTmem28, Lig4, Abhd13, Tnfsf13b
Downstream geneLOC100040008, LOC384782, LOC100040507, LOC665306, Irs2, Col4a1, Col4a2, Rab20, 0710008K08Rik, Cars2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079F12.T7 (MSMg01no079_f12.b1)MSMg01-079F12.TJ (MSMg01no079_f12.g1)
ACCAG300445AG300446
length715720
length of high quality
(start - end)
527 (66 - 592)393 (67 - 459)
definitionCHROMAT_FILE: MSMg01no079_f12.b1 PHD_FILE: MSMg01no079_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:57 2005CHROMAT_FILE: MSMg01no079_f12.g1 PHD_FILE: MSMg01no079_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:27:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,380,251 - 10,380,776)(10,527,601 - 10,527,990)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
CCACAGTTGCCCCTAGCACTGACTTGATGGCCTGGGCATGAGGCTGCTTT
CATTACCCCTGAGTTTTACCTGTTTCTTCTGATCCTCAATGGTAAATTTC
TATTACCAATATTGTCTCCTATTTTGTACTCAAAATAAATCCTGTTTTTT
GAAGAAAAGCCAGGAAGTGCAGAAAACCTTATTCATTAGCCTTGCAGAGA
AGCAACATGAAGACTTCCTCAGGACTGAACCGCTGGGGAGAAGTAGGGCT
TGATTCTGCTGAACTCACAGCTCTTCCTGGTGAGCTGGGGGAAGTGCTTT
GTGATGCCAGGCACGATGCTCACAGGTGTGGCCAGGGAGACAGCACATTG
ATACAGATGGCAAAACAGTGAGACTCTGCAATTATCATAAAAGTCCTCCG
AATTATACTCTGCATCCCCATCAAGATTAATACACAAATCATTTATATTG
CATATTGGCTAACTGTAAATGATTGTATCAAATTCAAAAATACATTTACA
ATAGCACAGACCATGGATTGTGCTAAAATAAATGCAGCCGGCCACGTGTG
AGGCTTCAGTTATTAAAGCCATGGAATGCTGATGAGAGAAATTAGCAAAG
ATCAGAACAGACCAGTCAAGAGTTCTTCAGAATGACTAATTTCCATAGTA
CTAGTATTGAAATTC
ATGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGGTAGAAGCATGAATACGTTTTGTTTCTTCC
CCTGAAAGTCAATCCATGCATTTCTTGGCTCATGAACAGTGGGGTCCTAG
CAGAGGCCATGGAGTGTGTGAATTAGGCTGTTGGATGCAGGCAGCCATGG
GGTGTGTGAACAGTCTCCCCAGACACGCTCAGAAAGAGTGAGCTTCTAAT
ACAACCACAGGCTGTGTGGTGGGGCCTGGGTGGCACCTTCAGCAAGTGAT
TCCCTGGAGTTGAAAGGAAGCAGGGAGGGAGAGATGCAAGGGTTGAGGAA
GATAAGAGAACAACAGCAGAGTGACTGTAAAATCCAGGATCCATCTCAAG
TGTTGCAAGTCATCTTGGGTCCTCATGTGGTTCTTCACAATCTAAGGATG
CATTTACAGAGGCAGTAAAAACAGAGGCAGGTTCTAGTATATACACCTAC
TGAATCTAGTTGTGGTCCTTGACTAAATGTAGACTCTGCTTACGAGGGAG
GTGGTAGAAGACAGAACTCGCATCTTTCAGCTTTGTTTTTGGACGAATAC
ACACTACTCTTAATGATGGAAAAACTGTCTTATTGACGATTATTTATTGA
GATATTCACTCCTTATCTCCATGTTCTTTCCCCTCCTATCTATCTTGTAA
ATCTACTTCTTTCTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_f12.b1 MSMg01no079_f12.b1 CHROMAT_FILE:
MSMg01no079_f12.b1 PHD_FILE: MSMg01no079_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:57 2005
         (527 letters)



>mm_chr8_10380051_10380977
          Length = 927

 Score =  963 bits (498), Expect = 0.0
 Identities = 519/526 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcactgacttgatggcctgggcatgaggctgctttcattacccctgagttttacctgttt 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 201 gcactgacttgatggcctgggcatgaggctgctttcattacccctgagttttagttgttt 260

                                                                       
Query: 61  cttctgatcctcaatggtaaatttctattaccaatattgtctcctattttgtactcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttctgatcctcaatggtaaatttctattaccaatattgtctcctattttgtactcaaaa 320

                                                                       
Query: 121 taaatcctgttttttgaagaaaagccaggaagtgcagaaaaccttattcattagccttgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaatcctgttttttgaagaaaagccaggaagtgcagaaaaccttattcattagccttgc 380

                                                                       
Query: 181 agagaagcaacatgaagacttcctcaggactgaaccgctggggagaagtagggcttgatt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 381 agagaagcaacatgaagacttcctcaggactgaaccggtggggagaagtagggcttgatt 440

                                                                       
Query: 241 ctgctgaactcacagctcttcctggtgagctgggggaagtgctttgtgatgccaggcacg 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 ctgctgaactcacagctcttcctggtgagctgggggaagtgctttgtgatgccaggcagg 500

                                                                       
Query: 301 atgctcacaggtgtggccagggagacagcacattgatacagatggcaaaacagtgagact 360
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atgctcagaggtgtggccagggagacagcacattgatacagatggcaaaacagtgagact 560

                                                                       
Query: 361 ctgcaattatcataaaagtcctccgaattatactctgcatccccatcaagattaatacac 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 561 ctgcaattatcataaaagtcctccgaattatactctgcatccccataaagattaatacac 620

                                                                       
Query: 421 aaatcatttatattgcatattggctaactgtaaatgattgtatcaaattcaaaaatacat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaatcatttatattgcatattggctaactgtaaatgattgtatcaaattcaaaaatacat 680

                                                         
Query: 481 ttacaatagcacagaccatggattgtgctaaaataaatgcagccgg 526
           | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcacaatagcacagaccatggattgtgctaaaataaatgcagccgg 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no079_f12.g1 MSMg01no079_f12.g1 CHROMAT_FILE:
MSMg01no079_f12.g1 PHD_FILE: MSMg01no079_f12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:27:57 2005
         (393 letters)



>mm_chr8_10527401_10528193
          Length = 793

 Score =  716 bits (370), Expect = 0.0
 Identities = 385/390 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaggtagaagcatgaatacgttttgtttcttcccctgaaagtcaatccatgcatttctt 60
           |||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||
Sbjct: 590 tcaggtagaagcatgaatacattttgtttcttcccctgaaagtcattccatgcacttctt 531

                                                                       
Query: 61  ggctcatgaacagtggggtcctagcagaggccatggagtgtgtgaattaggctgttggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ggctcatgaacagtggggtcctagcagaggccatggagtgtgtgaattaggctgttggat 471

                                                                       
Query: 121 gcaggcagccatggggtgtgtgaacagtctccccagacacgctcagaaagagtgagcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 gcaggcagccatggggtgtgtgaacagtctccccagacacgctcagaaagagtgagcttc 411

                                                                       
Query: 181 taatacaaccacaggctgtgtggtggggcctgggtggcaccttcagcaagtgattccctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 taatacaaccacaggctgtgtggtggggcctgggtggcaccttcagcaagtgattccctg 351

                                                                       
Query: 241 gagttgaaaggaagcagggagggagagatgcaagggttgaggaagataagagaacaacag 300
           |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct: 350 gagttgaaaggaagcagggagggagagatgcaggggttgaggaagataagagaagaacag 291

                                                                       
Query: 301 cagagtgactgtaaaatccaggatccatctcaagtgttgcaagtcatcttgggtcctcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 cagagtgactgtaaaatccaggatccatctcaagtgttgcaagtcatcttgggtcctcat 231

                                         
Query: 361 gtggttcttcacaatctaaggatgcattta 390
           ||||||||||||||||||||||||||||||
Sbjct: 230 gtggttcttcacaatctaaggatgcattta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)