BAC Information

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BAC

Clone NameMSMg01-079J05
Chromosome8 (Build37)
Map Location 14,333,823 - 14,334,072
singlet/doubletsinglet
Overlap geneDlgap2
Upstream geneTfdp1, Atp4b, Grk1, Gm687, Gas6, LOC434282, 1700029H14Rik, Rasa3, 4932443I19Rik, LOC665516, Cdc16, Upf3a, AF366264, D8Ertd457e, 2410022L05Rik, EG665536, Fbxo25, LOC100041103, 2610019F03Rik, EG546036, Erich1, LOC100041140
Downstream geneC030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079J05.T7 (MSMg01no079_j05.b1)MSMg01-079J05.TJ (MSMg01no079_j05.g1)
ACCAG300623AG300624
length701779
length of high quality
(start - end)
249 (68 - 316)44 (72 - 115)
definitionCHROMAT_FILE: MSMg01no079_j05.b1 PHD_FILE: MSMg01no079_j05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:14 2005CHROMAT_FILE: MSMg01no079_j05.g1 PHD_FILE: MSMg01no079_j05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAAAATTTGCGGCGCTAAACGACTCCTATTTTTCAAAACTGGCGGAATCA
CTCTTGTTTTCGAAATAAGGCTTGTTTACTAGTTAGGCGCAGTGGAAGCC
AGCGCCATCTTATAATGGCGATTGCTCGTGGCACGGCTCTCCACACCTAA
CTGTGTGAGTAGCATGGCCGTTTCACATCACAGAGAACTTTTCTAGGGGA
AAGTTTGGTAAATTATAAATACTGGTTAAATTTTACCAGAAGGCTAGCCT
AAAAAAAAAAATTAGGAAAAACAAAAGAGAAATTTACATAAAACCATGTA
CACAGACTGCCTGTCATTCNATCNGTCAAAACCCTGCCAAGTGCGCAAGT
GCGCGGGCTCCTAGGCATTGTGGAGGATAGCTACACACAGGGTCTCTCTC
TTGTCAGAGTGGCCACCAAAGAGTGAGATCTAGCCCTCCAGAGAGATCCA
AATTATCAGGCAATCGACAAAGGAGACCCATGGTCCTGAGAAACGTTGGT
GTCGGAGGGAAGGGTAGAGAAGCACAGTCCTCAGAAATACACAGCAAGCA
TGTGCAGTGCACTGCAATTGCCAGTAACGTAGTCTCATTTAAACTATTAT
CAGGGCGAAGAAACAACTTAGGCTAAGTCCTGTAGCTGCTGGAAAACATG
AGCTGGTAGGTCTAGAAGATTAGACACCCCTGGTTCCATGCTGAAGAGAA
A
ATGCTGTGGGAGCCTGGCGCCGCCTGGCATCGTCACCCGGTGACCTATAG
AAGGATTGCGGCACCTCATTAGAGAGAAACTGGGATTCTGAGCATCTCAC
ATCAGATAAAGGAGCTCCCCACAGAGCTTAGTCCTGGACTGGATTACACC
ATGGGGAAGCGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCT
CCCTTCCCTCCCTCCTCTTTTTCCCTTCCCCCTCCCCCCTCCTCCCCCTT
TTTTTTTCGCCCCGCCCTCCCCCCTCCCCCTCCTCCGTCCTCCCCCCTCC
CCCCCCGCCCCCGCCCCCCTTTCAGTGGGCTTCCCGCCCCACCCACCCCC
CCACCCCACAAGTTTTTTTTTTCTCCCCCCCGCCCTAATTTTCAGATCTT
CCTCTCTTCTCTTCCCCCTCTCCCTCTCTCCTCCCCCTCTCTTCTCTTTC
CTCCGCCCCTCCTTCCCTCCCTCGCTCCTCCTCCTGCCCTCCCTCCCTCC
TCTCCCTTCCTCCTCTTCCTTCTTTCCCCCCCTCCTTTCTCTCACGCTCT
TTTCCTCTCCCCCCTCTCCCCCCCTCCTCTCTTCTGCCCCGCCTCCCTCC
CCTTCTCTCCTCCTCCCCCTCCCTCCCCTCTCTTCTCCCCCCTCCACCTC
TTCCCTCCCCCACCCCCGCCCCCTCTCCCTCCTCTTCTGTCCCCCCCCTC
TCTCCTTCCTCGCCCCTCCCCCTCTCTCTCTTTTTTTCTTCTCCCCCATC
CCCCTCTCACCCTCTTTTCCTTCTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_j05.b1 MSMg01no079_j05.b1 CHROMAT_FILE:
MSMg01no079_j05.b1 PHD_FILE: MSMg01no079_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:14 2005
         (249 letters)



>mm_chr8_14333545_14334194
          Length = 650

 Score =  460 bits (238), Expect = e-134
 Identities = 247/250 (98%), Gaps = 1/250 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggcttgtttactagttaggcgcagtggaagccagcgccatcttataatggcgattgctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 aggcttgtttactagttaggcgcagtggaagccagcgccatcttataatggcgattgctc 469

                                                                       
Query: 61  gtggcacggctctccacacctaactgtgtgagtagcatggccgtttcacatcacagagaa 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 atggcacggctctccacacctaactgtgtgagtagcatggccgtttcacatcacagagaa 409

                                                                       
Query: 121 cttttctaggggaaagtttggtaaattataaatactggttaaattttaccagaaggctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 cttttctaggggaaagtttggtaaattataaatactggttaaattttaccagaaggctag 349

                                                                       
Query: 181 cct-aaaaaaaaaaattaggaaaaacaaaagagaaatttacataaaaccatgtacacaga 239
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 cctaaaaaaaaaaaattaggaaaaacaaaagagaaatttacataaaaccatgtacacaga 289

                     
Query: 240 ctgcctgtca 249
            |||||||||
Sbjct: 288 gtgcctgtca 279


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 650
Length adjustment: 9
Effective length of query: 240
Effective length of database: 641
Effective search space:   153840
Effective search space used:   153840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)