BAC Information

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BAC

Clone NameMSMg01-079L05
Chromosome8 (Build37)
Map Location 68,111,303 - 68,111,964
singlet/doubletsinglet
Overlap genenone
Upstream geneCpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75, Trim60, LOC665388, LOC665396, LOC100040949, LOC665405, Vaultrc-ps1, LOC100040967
Downstream geneMarch1, LOC100040986, 1810029B16Rik, Tktl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079L05.T7 (MSMg01no079_l05.b1)MSMg01-079L05.TJ (MSMg01no079_l05.g1)
ACCAG300718AG300719
length711712
length of high quality
(start - end)
665 (40 - 704)572 (69 - 640)
definitionCHROMAT_FILE: MSMg01no079_l05.b1 PHD_FILE: MSMg01no079_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:24 2005CHROMAT_FILE: MSMg01no079_l05.g1 PHD_FILE: MSMg01no079_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGGCACTTGTGAGCCTCAGTACTAGATACTGGTGCTGGGAATCACACTGG
GTTCTCTGTAAGAGTAGTGCATGCCTTTCTCCACTAGGCCATCTCATCTC
TAGTGCCACACCTGGCGTCTGTAAGTGCTGGCAGTTTAGGCCCTCATGAT
TGCATAGCAGGAGATCTTACCTACTGAGTCATCACCCAGCCTCAGTTTGA
ATTAAACTACTGATGCTCTGGCAACTAAGATGCTAGGACATTATTTCCTA
GCATCTTATTAATCATTAGTTTTTAAAATGAAAATCTTCATCTCTCGGAT
CCAGTGGTAGAACTGCTTGCTGTAGAGGGAGATTAAAAGGAGGTATTCTT
ACTCTAGATACATTTACTTTAATCCAGATATCAGAGAGAATACCATTGCT
TCTAAAATGGTCTGGTTAATGCAAAAAACACAGTATACATTTAAGGTAAG
TCTATCATATTTAAATACTCAACCCAAGGGGATTATTAATGACAAAGCTA
GCTATTGACAGTTTCAGAGGCTATTTCTATATTGACATGTAACAGTGAAG
AAAGCAGTTTTATACATGGAGGAAAAGACTGAGAAAAGTGAGTAACATAC
TTAAAGGATCCATAAGGAATGTAGATAGATCAGCTTCTACACTCTTGCCA
AACCTTCCAGA
GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGTTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACCTAGGATACCAAGATATTAGATACAATTTCCTTAACACA
TGAAACTTCAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_l05.b1 MSMg01no079_l05.b1 CHROMAT_FILE:
MSMg01no079_l05.b1 PHD_FILE: MSMg01no079_l05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:24 2005
         (665 letters)



>mm_chr8_68111100_68112164
          Length = 1065

 Score = 1168 bits (604), Expect = 0.0
 Identities = 648/664 (97%), Gaps = 4/664 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattccaggcacttgtgagcctcagtactagatactggtgctgggaatcacactgggt 63
           ||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||||||
Sbjct: 204 ggaattccaggcatttgtgagcctcggtactagatgctggtgctggtaatcacactgggt 263

                                                                       
Query: 64  tctctgtaagagtagtgcatgcctttctccactaggccatctcatctctagtgccacacc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tctctgtaagagtagtgcatgcctttctccactaggccatctcatctctagtgccacacc 323

                                                                       
Query: 124 tggcgtctgtaagtgctggcagtttaggccctcatgattgcatagcaggagatcttacct 183
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggcttctgtaagtgctggcagtttaggccctcatgattgcatagcaggagatcttacct 383

                                                                       
Query: 184 actgagtcatcacccagcctcagtttgaattaaactactgatgctctggcaactaagatg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actgagtcatcacccagcctcagtttgaattaaactactgatgctctggcaactaagatg 443

                                                                       
Query: 244 ctaggacattatttcctagcatcttattaatcattagtttttaaaatgaaaatcttcatc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctaggacattatttcctagcatcttattaatcattagtttttaaaatgaaaatcttcatc 503

                                                                       
Query: 304 tctcggatccagtggtagaactgcttgctgtagagggagattaaaaggaggtattcttac 363
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tctcggatccaatggtagaactgcttgctgtagagggagattaaaaggaggtattcttac 563

                                                                       
Query: 364 tctagatacatttactttaatccagatatcagagagaataccattgcttctaaaatggtc 423
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| 
Sbjct: 564 tctagatacatttactttaatccagatatcagagagaatatcattgcttctaaaatggtt 623

                                                                       
Query: 424 tggttaatgcaaaaaacacagtatacatttaaggtaagtctatcatatttaaatactcaa 483
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 624 tggttaatgcaaaaaacacagtatacatttaaggtaagactatcatatttaaatactcaa 683

                                                                       
Query: 484 cccaaggggattattaatgacaaagctagctattgacagtttcagaggctatttctatat 543
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 684 cccaaggggattattaatgacaaagctagctcttgacagtttcagaggctatttctatat 743

                                                                       
Query: 544 tgacatgtaacagtgaagaaagcagttttatacatggaggaaaagactgagaaaagtgag 603
           ||||||||||||||||||||||||||||||||||||||| |||||||  |||||||||||
Sbjct: 744 tgacatgtaacagtgaagaaagcagttttatacatggagaaaaagac--agaaaagtgag 801

                                                                       
Query: 604 taacatacttaaaggatccataaggaatgtagatagatcagcttcta--cactcttgcca 661
           |||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||
Sbjct: 802 taacatacttaaaggatctataaggaatgtagatagatcagcttctatacactcttgcca 861

               
Query: 662 aacc 665
           ||||
Sbjct: 862 aacc 865


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)