Query= MSMg01no079_l22.b1 MSMg01no079_l22.b1 CHROMAT_FILE:
MSMg01no079_l22.b1 PHD_FILE: MSMg01no079_l22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:27 2005
(642 letters)
>mm_chr8_38506118_38507159
Length = 1042
Score = 1222 bits (632), Expect = 0.0
Identities = 639/642 (99%), Gaps = 2/642 (0%)
Strand = Plus / Minus
Query: 1 ccccattttttaatggggttatttgaacattttcatataaacatgttcatacagaagaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 ccccattttttaatggggttatttgaacattttcatataaacatgttcatacagaagaaa 978
Query: 61 ataaaaaaaacataattatttcaacacaaacagcataaggaaaaaaacaacactaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 ataaaaaaaacataattatttcaacacaaacagcataaggaaaaaaacaacactaaaaat 918
Query: 121 caacaccacaatgtccaaagttgacacacagatttctttaatttttattttttattgaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 caacaccacaatgtccaaagttgacacacagatttctttaatttttattttttattgaaa 858
Query: 181 ataaatatttcatacaaaatagtctgattaactccccacatctcctttcagctcctcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 ataaatatttcatacaaaatagtctgattaactccccacatctcctttcagctcctcctc 798
Query: 241 acatccccacctttctaacaccacaccttcttttctttatcttttaagaaaatagatagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 acatccccacctttctaacaccacaccttcttttctttatcttttaagaaaatagatagg 738
Query: 301 aaatataaaaataaaacaaaacaacaacaaaaacaaacacataggaaaagcatgacaaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 737 aaatataaaaataaaacaaaacaacaacaaaaacaaacacataggaaaagcatgagaaag 678
Query: 361 ataattcacatgcaaagacacattaatacaaagcccataaaaacataaaattggaaacta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ataattcacatgcaaagacacattaatacaaagcccataaaaacataaaattggaaacta 618
Query: 421 taagtacaagcaaaggaacagtgagggttaaaaaatgtcaaaacaaagcaatttgagacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 taagtacaagcaaaggaacagtgagggttaaaaaatgtcaaaacaaagcaatttgagacc 558
Query: 481 aagaaatatccaaatgcacaaacacacacacacacacacacacacacacacacacacaca 540
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 557 aagaaatatccaaatgcacaa--acacacacacacacacacacacacacacacacacaca 500
Query: 541 cacacacacactatctgtatccatttctatatccgtatccatttccatatccatattcat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 cacacacacactatctgtatccatttctatatccgtatccatttccatatccatattcat 440
Query: 601 ttccatatccatattcatttccatatccatatccatttctat 642
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttccatatccatattcatttccatatccatatccatttctat 398
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 84
Number of extensions: 25
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1042
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1032
Effective search space: 652224
Effective search space used: 652224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no079_l22.g1 MSMg01no079_l22.g1 CHROMAT_FILE:
MSMg01no079_l22.g1 PHD_FILE: MSMg01no079_l22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:27 2005
(543 letters)
>mm_chr8_38318556_38319498
Length = 943
Score = 1042 bits (539), Expect = 0.0
Identities = 542/543 (99%)
Strand = Plus / Plus
Query: 1 ccaaccaaccaggttcactcatttacctcaaaaactaatggaaaaaataagtgaaaagtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccaaccaaccaggttcactcatttacctcaaaaactaatggaaaaaataagtgaaaagtt 260
Query: 61 agaaaggaatttattcagtatgatcatattagtaagacaatgggcaccaagtttctgaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaggaatttattcagtatgatcatattagtaagacaatgggcaccaagtttctgaga 320
Query: 121 atctcacattgcttctatatttgaagcttaagagaaaataaaaatttaaaaggcaaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atctcacattgcttctatatttgaagcttaagagaaaataaaaatttaaaaggcaaagga 380
Query: 181 attggtcagtcattcagctctgatgtagcaactaaagggatctaggtgcagtgtaaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attggtcagtcattcagctctgatgtagcaactaaagggatctaggtgcagtgtaaaaat 440
Query: 241 ggagggttggcaggatgtttctgcaaatcttgaaaataattattcttatcctcatagcat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggagggttggcaggatgtttctgcaaatcttgaaaataattattcttatcctcatagcat 500
Query: 301 ctgccttgaaagatagagttaatcttagctgttaacttgacgggtatctgacaagacaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 501 ctgccttgaaagatagagttaatcttagctgttaacttgacgggtatctgagaagacaag 560
Query: 361 tgaacttgtgtgcattggcaagggcgctttcagaaagatttaactgaagaaaggagattt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaacttgtgtgcattggcaagggcgctttcagaaagatttaactgaagaaaggagattt 620
Query: 421 gatctcaagctggccagcaccttttcttacactggagtcccaacatgaacaaataggaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gatctcaagctggccagcaccttttcttacactggagtcccaacatgaacaaataggaca 680
Query: 481 tggggaatagagagggagaatagaacaccaatctctgtctttttctcagtttccttttct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggggaatagagagggagaatagaacaccaatctctgtctttttctcagtttccttttct 740
Query: 541 gtc 543
|||
Sbjct: 741 gtc 743
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
