BAC Information

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BAC

Clone NameMSMg01-079P14
Chromosome8 (Build37)
Map Location 127,991,934 - 128,162,230
singlet/doubletdoublet
Overlap geneSipa1l2
Upstream geneCog2, Agt, Capn9, 2310022B05Rik, Ttc13, Arv1, 2310031A18Rik, LOC668444, Trim67, 2810004N23Rik, Gnpat, Exoc8, Gm505, Egln1, Tsnax, Disc1
Downstream gene4933403G14Rik, 2310079N02Rik, E330039K12Rik, BC021891, Kcnk1, Slc35f3, LOC668434, 1810063B05Rik, EG619653, Irf2bp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-079P14.T7 (MSMg01no079_p14.b1)MSMg01-079P14.TJ (MSMg01no079_p14.g1)
ACCAG300928AG300929
length719725
length of high quality
(start - end)
274 (91 - 364)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no079_p14.b1 PHD_FILE: MSMg01no079_p14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:44 2005CHROMAT_FILE: MSMg01no079_p14.g1 PHD_FILE: MSMg01no079_p14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,991,934 - 127,992,205)(128,161,944 - 128,162,230)
sequence
TTGCGGCGCTAAACGACTCCTATATTCAGAGGATCCGCGGAATTCCAACT
GTCTTGCCCCCTGAGAACTATCTCAAAAAACAAACAACAAACAAACAACC
CAAAGAGAACCCATCCTCTCTGGAATAGCAGCTGCTTTCCCAAGCCCTGG
GACTATAGTGGAGTTCCCTGTACAACCTGCTGGGCCTCTGAGGCTGAAGC
ACAGACAGTGGGAGACACACGCCATACTTACTAGCAGTCGTTGCACTATT
TCTCGGATGTCTTCAGAACGGATATCCACGGAGGAGAGCAGGAGGCACTC
TCCCCTTTCATAGATGGCTTTGATGCTCACTAGCCCTGAAGTCCAGCCTA
TCACGTCCCTACTGGATCTGTTAAACACCTCATTCTTGGAATCCTTCTCG
ATCAGCATGATGAGCTCATTGTAGATCCCCAGGAGACACTCAATGTCCGC
GGACTGCCCTAAGTCCCGTGCACCCACGTGTCACATGATGGCCCCGATGC
TGAACAGGTGCGCGTCCTTCCTTGGTTTTACCCGCTCTTTCTTCTCTGCC
CCCAGCGTTATGAAGCTGACTTTTGCATAATTGTCCCCTGTTGCCGTTGT
GACACAGTTCTTGGCTAAATCCTTCCAGTACTCTTTGCCCTGTTCGGGTA
GCCATGCCCCGGAATTTCTCTGACTTAAGGGGCGCATTTTCTGCCTTGAC
CTCTTTGGCTTAAAGGCAG
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACCGAGGGATCTTCAGGAGCCAATGAGTTC
TTGACCTGACACCTTACACCAGGAGAAGGCATTTGCAGCTAACTAAAGGC
TGCACGATGAATGGACAGTGAGGTCACAGTGACCTTCAGATGTTGCAAGA
GACGAGGGGCTCACAGGTGCGCATCTATGGAGCCGGTCGCAGACTCAAGG
GCACTTACAGAAGGTGATCACATGGATATGCCTCTTTGAAGCAGGGGAGA
AATATTTTATCCTCTTATACTAAAAACCTCAGAGAAGCCATGAGCAGGAG
GAAGACAGAGAAGAGGGGAGGTCTATGGTATCAATGTATCTAAGCTTCCA
GGGAGTCTCTCTGACAAGACATGTGATCTAGACTCTTTCCTTGTTGGTGT
GACAAAATGCCTGGTAGAACCTTCCTATCGGAGAAAGAATGTTTGCTCTG
AACGTTTGTCTGTTCAACAGCCCTGCCCCTCATGTGCAACGCGCCAGGCT
GATATCTCAATGTTTACATCGTCGCCTGTTCTTCCATAGGACCATGATTC
CTTTCCTCACTTCTGCTTGTTGTTATACCACTGCCTTTTACTCCCGTTCC
AGCTTACCCAACGCCCCCTTTCTGACTCTCATATACCCCTTATTTCCTTG
CTGTACCGATGCCTCTACCCTCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no079_p14.b1 MSMg01no079_p14.b1 CHROMAT_FILE:
MSMg01no079_p14.b1 PHD_FILE: MSMg01no079_p14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:44 2005
         (274 letters)



>mm_chr8_127991734_127992407
          Length = 674

 Score =  495 bits (256), Expect = e-144
 Identities = 268/272 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   acaaacaacccaaagagaacccatcctctctggaatagcagctgctttcccaagccctgg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 acaaacaacccaaagagaacccgtcctctctggaatagcagctgctttcccaagccctgg 260

                                                                       
Query: 61  gactatagtggagttccctgtacaacctgctgggcctctgaggctgaagcacagacagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactatagtggagttccctgtacaacctgctgggcctctgaggctgaagcacagacagtg 320

                                                                       
Query: 121 ggagacacacgccatacttactagcagtcgttgcactatttctcggatgtcttcagaacg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagacacacgccatacttactagcagtcgttgcactatttctcggatgtcttcagaacg 380

                                                                       
Query: 181 gatatccacggaggagagcaggaggcactctcccctttcatagatggctttgatgctcac 240
           | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 gttatccacggaggagagcaggaggcactctcccctttcatagaaggctttgatgctcac 440

                                           
Query: 241 tagccctgaagtccagcctatcacgtccctac 272
           |||||||||||||||||| |||||||||||||
Sbjct: 441 tagccctgaagtccagccaatcacgtccctac 472


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 274
Length of database: 674
Length adjustment: 9
Effective length of query: 265
Effective length of database: 665
Effective search space:   176225
Effective search space used:   176225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no079_p14.g1 MSMg01no079_p14.g1 CHROMAT_FILE:
MSMg01no079_p14.g1 PHD_FILE: MSMg01no079_p14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:44 2005
         (287 letters)



>mm_chr8_128161744_128162430
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgagggatcttcaggagccaatgagttcttgacctgacaccttacaccaggagaaggc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 487 accgagggatcttcaggagccaatgagttcttgacctgacaccttagaccaggagaaggc 428

                                                                       
Query: 61  atttgcagctaactaaaggctgcacgatgaatggacagtgaggtcacagtgaccttcaga 120
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 atttgcagttaagtaaaggctgcacgatgaatggacagtgaggtcacagtgaccttcaga 368

                                                                       
Query: 121 tgttgcaagagacgaggggctcacaggtgcgcatctatggagccggtcgcagactcaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgttgcaagagacgaggggctcacaggtgcgcatctatggagccggtcgcagactcaagg 308

                                                                       
Query: 181 gcacttacagaaggtgatcacatggatatgcctctttgaagcaggggagaaatattttat 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcacttagagaaggtgatcacatggatatgcctctttgaagcaggggagaaatattttat 248

                                                          
Query: 241 cctcttatactaaaaacctcagagaagccatgagcaggaggaagaca 287
           ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cctcttaaactaaaaacctcagagaagccatgagcaggaggaagaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)