BAC Information

Click to search

BAC

Clone NameMSMg01-080A11
Chromosome8 (Build37)
Map Location 39,748,848 - 39,749,228
singlet/doubletsinglet
Overlap genenone
Upstream geneSgcz
Downstream geneTusc3, LOC100038974, LOC632066, EG621335, LOC434304, Msr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080A11.T7 (MSMg01no080_a11.b1)MSMg01-080A11.TJ (MSMg01no080_a11.g1)
ACCAG300969AG300970
length696700
length of high quality
(start - end)
639 (43 - 681)381 (70 - 450)
definitionCHROMAT_FILE: MSMg01no080_a11.b1 PHD_FILE: MSMg01no080_a11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:49 2005CHROMAT_FILE: MSMg01no080_a11.g1 PHD_FILE: MSMg01no080_a11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:28:49 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAGGGCTACCACATTTGATAAATGTTATTAGTTAGCCTTTTGTCATTCT
AATGTATCCTGAGTACAGTCTGTTTCACTATAGATATTTTTAACTTAAAA
ATATTTTCATACAATATATTTTAATGATGTTTCCCCTCTCCCAACTCCTC
CTAGATCATCCCTATCTCCTTAGTCATCAACTTTCTATTCTTTCTCTCTC
TTTCAAGAAACAAAGCCAAGAACAACAAAAAATCAACCATCCAACCAGCC
AAACAACAACAAAACCCCACAAAAACACAAAAATGAAAATAAAAACAAGC
AAAAAACCAATAGGATCAACCAACTAACCAACCAACCAACCAAAAACCAA
ATCAACAGTAACAAAAACAACACATGAGCAATGGAGAAATGGATCTACTT
TTGTACTAACCAATGACTCTTGGCTTGCACATGGGGTCCTCCCTGGAGTG
TGGTTACATACTTACTGACACTCATTTTCTTTGGATTAACTAATTTTTCC
CCCTTTGCCAGTGGGTATAAGCTGCACAAAGCTTCTTAAATAGAAGAGAG
ACCTCATGTCCACTTCTTCACACTGCTGGAACCCCATTTGGCTTGAGCTT
GCTGTGTGTAATGCCATAGTCTCTGAGTTAGTACGTGCACCAATCC
TGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTGAATTTCTTAAGCAAATGGATGCATCTGA
TGGTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTTATAGC
TAAATGAGCAGACAGAATAGCTCCATGTCATCGGAAGTTTCTGTAGGGGA
ACAATCTCAGATTGTAGTCATGCCAGGGGAAAAACTGTGGCTCATATTTT
CTGCATACTGTGAATATCTGTACTCAGACAAAGGGAAGTCCTTGCATTCC
CTGATTCTGTCCCAGGAAAGAACTTTCCATTCTCAGGAGTCTAAAGCAAT
ATAATCCTTACCATGGCCACACTTATATGAACAACACACATTCACTTAGA
ATTTCATCTGTTTTCCACAGAATCTTCCACAAATTAATGAAAACAGAAGA
GGGAGTAGTATGCATGAGAACAGCATCAGGATATAGAGTGAGAGAGAAAT
AGAATCTATTTTATTGAATCTAATTGATGACCGGCCTGGCCACATAATCT
ACTACTTGTCGCCCTCCCTTTTATTTGTAATATTACCAACTTAACCCACC
ACACCTCCAGTATTTATTTTACCCCCCCTTTTTGCATACCATATTTTTTC
TACCTAAAATTTAATACTTTTTAGATATTACTTGACTCCCATCATCCCCC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_a11.g1 MSMg01no080_a11.g1 CHROMAT_FILE:
MSMg01no080_a11.g1 PHD_FILE: MSMg01no080_a11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:28:49 2005
         (381 letters)



>mm_chr8_39748648_39749428
          Length = 781

 Score =  729 bits (377), Expect = 0.0
 Identities = 380/381 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgaatttcttaagcaaatggatgcatctgatggttgttttgttttgttttgttttgttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgaatttcttaagcaaatggatgcatctgatggttgttttgttttgttttgttttgttt 260

                                                                       
Query: 61  tgttttgttttgttttatagctaaatgagcagacagaatagctccatgtcatcggaagtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttttgttttgttttatagctaaatgagcagacagaatagctccatgtcatcggaagtt 320

                                                                       
Query: 121 tctgtaggggaacaatctcagattgtagtcatgccaggggaaaaactgtggctcatattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgtaggggaacaatctcagattgtagtcatgccaggggaaaaactgtggctcatattt 380

                                                                       
Query: 181 tctgcatactgtgaatatctgtactcagacaaagggaagtccttgcattccctgattctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgcatactgtgaatatctgtactcagacaaagggaagtccttgcattccctgattctg 440

                                                                       
Query: 241 tcccaggaaagaactttccattctcaggagtctaaagcaatataatccttaccatggcca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 tcccaggaaagaactttccattctcaggagtctaaagcaatataatccttaacatggcca 500

                                                                       
Query: 301 cacttatatgaacaacacacattcacttagaatttcatctgttttccacagaatcttcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacttatatgaacaacacacattcacttagaatttcatctgttttccacagaatcttcca 560

                                
Query: 361 caaattaatgaaaacagaaga 381
           |||||||||||||||||||||
Sbjct: 561 caaattaatgaaaacagaaga 581


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 381
Length of database: 781
Length adjustment: 9
Effective length of query: 372
Effective length of database: 772
Effective search space:   287184
Effective search space used:   287184
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)