BAC Information

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BAC

Clone NameMSMg01-080K11
Chromosome8 (Build37)
Map Location 125,363,406 - 125,363,707
singlet/doubletsinglet
Overlap geneLOC100043225
Upstream geneSlc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611
Downstream geneCdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080K11.T7 (MSMg01no080_k11.b1)MSMg01-080K11.TJ (MSMg01no080_k11.g1)
ACCAG301439AG301440
length709703
length of high quality
(start - end)
357 (40 - 396)331 (68 - 398)
definitionCHROMAT_FILE: MSMg01no080_k11.b1 PHD_FILE: MSMg01no080_k11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:38 2005CHROMAT_FILE: MSMg01no080_k11.g1 PHD_FILE: MSMg01no080_k11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCGCGGAATTC
TGTATCTCCCGTCAGGCGGGAGGTTTAATAAAGTAGAGGTGTCAGCCTGG
CTAATTTTCAGGGATAGACTACAAAAGAGAAATTCATCTGCATATTGTAT
AAGCTTGGGTTTAGGCAGAGACAAAGAGAGTAAATCAGAGGCCAGAGCCT
GGCCAAGTAAACTCGGGCTGTCCCCAAGCCCCTGGGGTAGGACTGTCCGA
GTGAGCTGGTGTCCCCAAGCCCCTAGGGTAGGACTGTCCGAGTGAGCTGG
GTAGGATGGTGGGTGTCCATGTCAGTCAAGTAAAGGCAAAGATATCTTGT
GACTGGGGTTGAGAAGAACTGAAAAAAAAATCAACCTAAGGTCTACAGGA
AATGGTGGCCCGCGAGGGTACTGTGGAGAGGAGAATAGAGGGTTCGTGCA
CTGCAGGGTGGAGAGGAGCCACTGCAGAGCTGTCAGGTCAGAGGCCCTGA
GCCAAGCTGTCGGTGCTATGGAGCTTTTATCTGTGAGTAAGAGGCGGCTA
AAGCGAGTAGACTTGGCGCACAGACGACCTTTTCTTAATAGGTCCTGAGA
CAGAGGCCGAAGTCCTCTGATACTTTGGTACAGCGAACGGAAGCTGGGCC
CTGCTTGATGTATTCGTAATGACGAAAGAGCCCTGATTGCCATGTAACTT
GTTTTATGA
ATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGTAGAGGCAGGAGGATCAGAATTGCAAGGGTT
ACACACTGAGTTTGAGGCCAGCATGGACTACAGGAGACACTGTCTCAAAA
GAAATCAATGTAATTTTTATCTGTCACAAATTGTTCTCTTTTTAATTAAT
TAAAAAAATTTAATCTACCTGGTGTTTTGCTCACACGTGTGTCTGTGTAC
CACATGCATGCCTAGTGCCCCTAGAAGCCAGAGAGCGTGTGGAGGTGGGT
TACAGACAGTTGATTTGCCATGAGGCTGCAGGGAGTTGAATCCAGCTCCT
CTGGAAGAGCTTGAATCATAAAAACATTTTGTTTCAGTTAACATACAGAT
GTAAACTCCCCCTATATAATAGACTGTTATTTTATTTTTTAGAATATATT
TGACCTTACGGTCCCAAATAAGATCTCAGACTCTTGTCACATTGGCGAAA
TGGAATGACTTGTCTTTGCTGAAGGTTTGTCCCTGACACTTTCTGGCACC
TCTTTGACCATGTTGATTTTACCTCTTTCCTGTTTTTGCATCAAGACCTC
ACTGAGCGTCATGCCTGTTTTATATCGCCCACACTTTCACCGTTAATCCT
TATTACGCCTTATCTATCTTTTACTTTCCTTCACCGATGCCCCCTTGACC
GCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_k11.b1 MSMg01no080_k11.b1 CHROMAT_FILE:
MSMg01no080_k11.b1 PHD_FILE: MSMg01no080_k11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:38 2005
         (357 letters)



>mm_chr8_125363201_125363958
          Length = 758

 Score =  412 bits (213), Expect = e-119
 Identities = 294/357 (82%), Gaps = 60/357 (16%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctgtatctccc--gtcaggcgggaggtttaataaagtagaggtgtcagcctggct 63
           ||||||||||||  ||  |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattctgtatc--cctggtcaggtgggaggtttaataaagtagaggtgtcagcctggct 263

                                                                       
Query: 64  aattttcagggatagactacaaaagagaaattcatctgcatatt-gtataagcttgggtt 122
            ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 264 gattttcagggatagactacaaaagagaaattcatctgcatatttgtataagcttgggtt 323

                                                                       
Query: 123 taggcagagacaaagagagtaaatcagaggccagagcctggccaagtaaactcgggctgt 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 taggcagagacaaagagagtaaatcagaggccagagcctggccaagtaaactcaggctgt 383

                                                                       
Query: 183 ccccaagcccctggggtaggactgtccgagtgagctggtgtccccaagcccctagggtag 242
           |||||||||||||||||||||                                       
Sbjct: 384 ccccaagcccctggggtagga--------------------------------------- 404

                                                                       
Query: 243 gactgtccgagtgagctgggtaggatggtgggtgtccatgtcagtcaagtaaaggcaaag 302
                      |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 -----------tgagctgggtaggatggtgggtgtccatgtcagtcaagtaaaggcaaag 453

                                                                    
Query: 303 atatcttgtgactggggttgagaagaactgaaaaaaaaat--caacctaaggtctac 357
           |||||||||||||||||||||||||||||||||||||     |||||||||||||||
Sbjct: 454 atatcttgtgactggggttgagaagaactgaaaaaaa---ggcaacctaaggtctac 507


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 758
Length adjustment: 9
Effective length of query: 348
Effective length of database: 749
Effective search space:   260652
Effective search space used:   260652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)