Query= MSMg01no080_k13.b1 MSMg01no080_k13.b1 CHROMAT_FILE:
MSMg01no080_k13.b1 PHD_FILE: MSMg01no080_k13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:38 2005
(346 letters)
>mm_chr8_117551717_117552463
Length = 747
Score = 663 bits (343), Expect = 0.0
Identities = 346/347 (99%), Gaps = 1/347 (0%)
Strand = Plus / Plus
Query: 1 ttctttccctctccccgttacaa-cagggactccatctgagtcagttgtcaaatatgcct 59
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctttccctctccccgttacaaacagggactccatctgagtcagttgtcaaatatgcct 260
Query: 60 ggaaggccgcaaaaatatgctcctggattttgttttattggccctcatctaatattttac 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggaaggccgcaaaaatatgctcctggattttgttttattggccctcatctaatattttac 320
Query: 120 caaacatatttttaaagaaatatataatttgtcccccaaagcaagggttttcccccatgc 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaacatatttttaaagaaatatataatttgtcccccaaagcaagggttttcccccatgc 380
Query: 180 catataatttgctaagtgtggctttactgcactgtagcctataatttatagtcagcctcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catataatttgctaagtgtggctttactgcactgtagcctataatttatagtcagcctcc 440
Query: 240 acaaggcaaaaaataactcccagctatgattaagtaagtaatggacaaggtaactaatat 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaaggcaaaaaataactcccagctatgattaagtaagtaatggacaaggtaactaatat 500
Query: 300 tcccggaaggaagcccttccagacactcatttttaatgacaaaacag 346
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcccggaaggaagcccttccagacactcatttttaatgacaaaacag 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space: 248706
Effective search space used: 248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_k13.g1 MSMg01no080_k13.g1 CHROMAT_FILE:
MSMg01no080_k13.g1 PHD_FILE: MSMg01no080_k13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:38 2005
(269 letters)
>mm_chr8_117716941_117717609
Length = 669
Score = 497 bits (257), Expect = e-145
Identities = 266/269 (98%)
Strand = Plus / Minus
Query: 1 aacaggactactatcctcatgagagccaggagtagtggcgcacacctataattgaagctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 aacaggactactatcctcatgagagccaggagtagtggcgcacacctataattgaagctc 551
Query: 61 tttagaggctgagacggaagaattgcaagtttaaggctagctcaaacgaataccatgaaa 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tttggaggctgagacggaagaattgcaagtttaaggctagctcaaacgaataccatgaaa 491
Query: 121 cccttacccccaagcaaagcaataacaaaataataagtaatgataatagacagaaacaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 cccttacccccaagcaaagcaataacaaaataataagtaatgataatagacagaaacaca 431
Query: 181 ggtgcatcagcctgcatgataaaagaggttcagcttgagatgatggttccacaagccaag 240
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ggggcatcagcctgcatgataaaagaggttcagcttgagatgatggttccacaagccaag 371
Query: 241 aggtccccatgacttccagtcaccaccag 269
||||||||| |||||||||||||||||||
Sbjct: 370 aggtccccaggacttccagtcaccaccag 342
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space: 171600
Effective search space used: 171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
