BAC Information

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BAC

Clone NameMSMg01-080L04
Chromosome8 (Build37)
Map Location 25,975,054 - 25,975,393
singlet/doubletsinglet
Overlap geneAdam32
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5
Downstream geneAdam9, Tm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-080L04.T7 (MSMg01no080_l04.b1)MSMg01-080L04.TJ (MSMg01no080_l04.g1)
ACCAG301472AG301473
length698699
length of high quality
(start - end)
274 (70 - 343)340 (72 - 411)
definitionCHROMAT_FILE: MSMg01no080_l04.b1 PHD_FILE: MSMg01no080_l04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:41 2005CHROMAT_FILE: MSMg01no080_l04.g1 PHD_FILE: MSMg01no080_l04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:29:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCGCAGAGAATCCGCGGAA
TTCTTTTGTACTTCTCATTGTGCCTTTTCTTTGTATGTAGAGTATATGCC
CTAACCCTACCCCCAGTATCCCAGCCAGCAGAGGCTACTGCTGCTGCTCC
TCCCCCCTCTTCTTTTTCTCTCCCTCTTCCTCCTCCTCTTCTCCTCCTCC
CTCTTCCTCTTCTTCCTCTTCTTCTTCTCCTCCTCCTTCCCCTTCCTCTC
TTCTTGTCTTCTTGTTCTTCCTCTGTTCTTCTTTCGCCTCTTTTCTTGTT
CTTGTTGTTCTTGTTCTCCTTCTCCCCCTCCTCTCGTTGTTGTTGTTATT
GATGTCCTCCTTCTCCTTCTCCTTCTTCTTTTCCTCCTCCCCCCTCTTTC
TCCTTCTTCTTCGACACCACAGTGATGAGCGATGTGGAAGTTAATACCCA
TAGTATTACTGATCCTCACATCCCCTCTAACACCTCCCTCCGTATTTCTG
CCCCTACCTGTTGTGATTCCAAGCTCCCGTTTGTAAATGAATAACTTATT
TCCCGAACCTGTTGTGCAACAGACTCCGGGTTATCATCCCATAGGCTCTC
CCACCTTTTTCAGGTTCACATTTTTGGTTCCGCCCACGTAAACCCCTTAC
TGTATTTTGTGACGCAATTTCCATTGTTCATTCCCCGACACGCTTTGG
TAATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATAGAGGGAATATCTGCTTTCTTAGGCT
AAAACTCACACATCAAAGGAAGACATGTTTAAAAACTGCGAAGAGAGACT
TATATTTGTATGAAGAAACTGTAGTGAATTCAAATGTTTGCCCTTAAATT
TAGAGAGCAGTTTCAGGCACATAGATCATCTCTAAACCTGGCAGTGTGTT
GCAGGCAGTAGGCCAGATGTCAGCATCTGTCTTTTCCCTTGTCTAGGTTC
TGTAGACTGTCGGCTGTTTCAGCCATCAGCCTTTACAAGGAAAGACCTGG
ACCTTCCCCAGGCTGATTGTGAATCATTTACTAGCAATTGGATGCTTTTC
CTGTTACTCAGCTTAATGCCATCTTAACTGGATCTAAATCGAAACATTTT
AACCCTTTTCCAATACACTTTTCTAAAAAAACCCCAGCCACTTCCCTGAG
AACAAATTTTTTAATTGTAATGAACTTGAGATTTGGGGCCAGGGAGCCTA
ATGAAAATCATTGGCACTGACCAATAAATCACAGTGCGAAGTACCATCAA
TACACTATTTTATTCCGAACGCTTTCACCTTCCCGCCCCCGATTTCACCC
ACTCTCATCAACTTTTTCTTCCACTCGATCCCATGTGGCTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no080_l04.g1 MSMg01no080_l04.g1 CHROMAT_FILE:
MSMg01no080_l04.g1 PHD_FILE: MSMg01no080_l04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:29:41 2005
         (340 letters)



>mm_chr8_25974854_25975593
          Length = 740

 Score =  650 bits (336), Expect = 0.0
 Identities = 339/340 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catagagggaatatctgctttcttaggctaaaactcacacatcaaaggaagacatgttta 60
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catagagggaatatctggtttcttaggctaaaactcacacatcaaaggaagacatgttta 260

                                                                       
Query: 61  aaaactgcgaagagagacttatatttgtatgaagaaactgtagtgaattcaaatgtttgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaactgcgaagagagacttatatttgtatgaagaaactgtagtgaattcaaatgtttgc 320

                                                                       
Query: 121 ccttaaatttagagagcagtttcaggcacatagatcatctctaaacctggcagtgtgttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccttaaatttagagagcagtttcaggcacatagatcatctctaaacctggcagtgtgttg 380

                                                                       
Query: 181 caggcagtaggccagatgtcagcatctgtcttttcccttgtctaggttctgtagactgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggcagtaggccagatgtcagcatctgtcttttcccttgtctaggttctgtagactgtc 440

                                                                       
Query: 241 ggctgtttcagccatcagcctttacaaggaaagacctggaccttccccaggctgattgtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggctgtttcagccatcagcctttacaaggaaagacctggaccttccccaggctgattgtg 500

                                                   
Query: 301 aatcatttactagcaattggatgcttttcctgttactcag 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aatcatttactagcaattggatgcttttcctgttactcag 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 740
Length adjustment: 9
Effective length of query: 331
Effective length of database: 731
Effective search space:   241961
Effective search space used:   241961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)