Query= MSMg01no080_p09.b1 MSMg01no080_p09.b1 CHROMAT_FILE:
MSMg01no080_p09.b1 PHD_FILE: MSMg01no080_p09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:01 2005
(490 letters)
>mm_chr8_24283072_24283962
Length = 891
Score = 861 bits (445), Expect = 0.0
Identities = 475/485 (97%), Gaps = 1/485 (0%)
Strand = Plus / Minus
Query: 5 gaattcctccata-gcagattacccacctacccacgtgccactgttccgtgatggcactt 63
||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gaattcctccaaaggaagattacccacctacccacgtgccactgttccgtgatggcactt 630
Query: 64 ttccaagtgatggagatatttcatcttcaggtctgggatctgaggatgttgtaggagggc 123
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 629 ttccaagtgatggagatattccatcttcaggtctgggatctgaggatgttgtaggagggc 570
Query: 124 agcctggctcccgagactatgaactgatgccactctgacacttgaggaccctgtggtatc 183
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct: 569 agcctggctcccgagactatgaactgatgccactctgatacttgaggaccctgtggtgtc 510
Query: 184 accctaacttcctgccagctccccagcctcacatttcctcctgcctgctccgttcccagt 243
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 509 accctaacttcctgccagctccccagcctcacagttcctcctgcctgctccgttcccagt 450
Query: 244 ggaaaacactttttcaaataaaaacacctctgactcttaagaacagcctcttgggaacta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 ggaaaacactttttcaaataaaaacacctctgactcttaagaacagcctcttgggaacta 390
Query: 304 ttttgcaaatgcttaaaaataaaaggtgggctgctgcttgtgtataatgtccgtagtgtt 363
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 389 ttttgcaaatgcttaaaaataaaaggtgggctgctgcttgtgtagaatgtccgtagtgtt 330
Query: 364 tcaacgctgtcccttgaaattgtctagggtcaggtgtcccttaacacacgcttgtggttt 423
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 329 tcaatgctgtcccttgaaattgtctagggtcaggtgtcccttaacacatgcttgtggttt 270
Query: 424 attgctttgactcacggtctgggtagagttttcaatctggttttgacctggctcccctcc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 attgctttgactcacggtctgggtagagttttcaatctggttttgacctggctcccctcc 210
Query: 484 cactc 488
|||||
Sbjct: 209 cactc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 891
Length adjustment: 10
Effective length of query: 480
Effective length of database: 881
Effective search space: 422880
Effective search space used: 422880
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no080_p09.g1 MSMg01no080_p09.g1 CHROMAT_FILE:
MSMg01no080_p09.g1 PHD_FILE: MSMg01no080_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:01 2005
(552 letters)
>mm_chr8_24137630_24138581
Length = 952
Score = 1013 bits (524), Expect = 0.0
Identities = 548/558 (98%), Gaps = 6/558 (1%)
Strand = Plus / Plus
Query: 1 aaaatgcccagattaaaccctagcactgcaaaaatcagaaacaaaaccaggaagcactct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 aaaatgcccagattaaaccctagcactgcaaaaatcagaaacaaaaccaggaagcactct 254
Query: 61 gccaacacagagttcttt----aaaaaaaga-a-aaaaaaacagtaaggagatagtagcc 114
|||||||||||||||||| ||||||||| | |||||||||||||||||| |||||||
Sbjct: 255 gccaacacagagttctttaaaaaaaaaaagagagaaaaaaacagtaaggagagagtagcc 314
Query: 115 tcttaaatcacaagatttcctagtaaatttatgcagagaatcaaagaaaatctgagcatc 174
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 tcttaaatcacaagatttcatagtaaatttatgcagagaatcaaagaaaatctgagcatc 374
Query: 175 acaagagtgctgtactccagaaaactgagactgtcacgtcgtaggagatttggacagtag 234
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 375 acaagagtgctgtactccagaaaactgtgactgtcacatcgtaggagatttggacagtag 434
Query: 235 aaagcaagcctgctgctggggactgggactcaggaggcagagcttctggggacagaccca 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aaagcaagcctgctgctggggactgggactcaggaggcagagcttctggggacagaccca 494
Query: 295 acttcactctctgcttgtgttccctggatctgccagcagctgccccactccacccccacc 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 acttcactctctgcttgtgttccctggatctgccagcagctgccccactccacccccacc 554
Query: 355 cccaggcaccctcagtttcacatctgtgaaatgggggcagtaacatcccttctctgtgct 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 cccaggcaccctcagtttcacatctgtgaaatgggggcagtaacatcccttctctgtgct 614
Query: 415 gcaaggaccaagtggcacctctagctcccaggagcacaggcgcggtgccaagtgctgcgg 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 gcaaggaccaagtggcacctctagctcccaggagcacaggcgcggtgccaagtgctgcgg 674
Query: 475 ggaccctagcttttggttttgttccaacagcctgagcctcaagaagaaacattaaatcgt 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggaccctagcttttggttttgttccaacagcctgagcctcaagaagaaacattaaatcgt 734
Query: 535 tttttctaggaaatgcca 552
||||||||||||||||||
Sbjct: 735 tttttctaggaaatgcca 752
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
