Query= MSMg01no081_c10.b1 MSMg01no081_c10.b1 CHROMAT_FILE:
MSMg01no081_c10.b1 PHD_FILE: MSMg01no081_c10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:16 2005
(543 letters)
>mm_chr8_15155750_15156692
Length = 943
Score = 982 bits (508), Expect = 0.0
Identities = 532/540 (98%), Gaps = 1/540 (0%)
Strand = Plus / Minus
Query: 5 gaattccctgtcctccgtggatgagttcctgacttcccaggactgagcccaggtttcctg 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gaattccctgtcctcagtggatgagttcctgacttcccaggactgagcccaggtttcctg 607
Query: 65 acccaacttgaagacattatacacgaggaaacaggaagaaattatctctagaggagctaa 124
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 606 acccaacttgaagacattatacatgaggaaacaggaagaaattatctctagaggagctaa 547
Query: 125 gagcattaccaacactggcaatgtgcccaatgagctgtggaaaatgtcacctctcattcc 184
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 546 gagcattaccaatactggcaatgtgtccaatgagctgtggaaaatgtcacctctcattcc 487
Query: 185 cgtctgtttctgcagttgacaagtgttcagtacagactcggaggcatttgtaacacactc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cgtctgtttctgcagttgacaagtgttcagtacagactcggaggcatttgtaacacactc 427
Query: 245 caagcaatcacagtacagtagttttgttgcatttttatttaattaaacatattctaagcc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 caagcaatcacagtacagtagttttgttgcatttttatttaattaaacatattctaagcc 367
Query: 305 tgcaaagactgaagtgactctccttctcatccctccctcagcctccacagaacctcatac 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tgcaaagactgaagtgactctccttctcatccctccctcagcctccacagaacctcatac 307
Query: 365 atgcgggacttcagacatctccttaagactagtttaagcctctccattgtctttgcctat 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atgcgggacttcagacatctccttaagactagtttaagcctctccattgtctttgcctat 247
Query: 425 tacagagcttataaataagtgttattctattttttaatttta-ttttttttcttattcac 483
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 246 tacagagcttagaaataagtgttattctattttttaattttatttttttttcttattcac 187
Query: 484 tttatagcctgcttactgccccctcctgatcaccccctcctacaatccctcccccacccc 543
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 186 tttatagcctgcttactgccccctcccgatcacctcctcctacaatccctcccccacccc 127
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space: 497289
Effective search space used: 497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_c10.g1 MSMg01no081_c10.g1 CHROMAT_FILE:
MSMg01no081_c10.g1 PHD_FILE: MSMg01no081_c10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:16 2005
(542 letters)
>mm_chr8_15003774_15004711
Length = 938
Score = 940 bits (486), Expect = 0.0
Identities = 525/540 (97%), Gaps = 4/540 (0%)
Strand = Plus / Plus
Query: 3 gggccctggttcaaatgggacatctgagcctgaacagtggagaccagccatggccctata 62
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gggctctggttcaaatgggacatctgagcctgaacagtggagaccagccatggccctata 262
Query: 63 agagcccaagaaggacagcatcctagaatcccataatccatcaagaaactgagggcagaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agagcccaagaaggacagcatcctagaatcccataatccatcaagaaactgagggcagaa 322
Query: 123 cgagtgatgcccgaggatgcctgctgggtggaagggttgtccatgctggcttggctccag 182
||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 323 cgagtgatgcctgaggatgcctgctgggtggaagggttgtccatgctggtttggctccag 382
Query: 183 cctatgcatcttgaacaaggctctctgggacacaggatgagcactgggacacccggggag 242
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 383 cctatgcatcttgaacaaggctctctgggacacaggatgaacactgggacacccggagag 442
Query: 243 ggaaggtcagggatcctggagacatttagagccagactaaagagaatatagatatctggc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaaggtcagggatcctggagacatttagagccagactaaagagaatatagatatctggc 502
Query: 303 atgcattcacgaagggaagtaggggggaaatgtgttcccatcctctcataaagaaatatc 362
|| ||| ||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct: 503 at----tcaggaagggaagtaggggggaaatgtgttctcatcctctcacaaagaaatatc 558
Query: 363 tgcctctttagtgcatagaacctacactcccagcaagaaggtgggctcatcaccgatgac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgcctctttagtgcatagaacctacactcccagcaagaaggtgggctcatcaccgatgac 618
Query: 423 aataatctcccctggagatggcatctgcatccattcgactgtcagagctggggaagggaa 482
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 619 aataatctcccctggagatggcgtctgcatccattcgactgtcagagctggggaagggaa 678
Query: 483 gcttgcccacatctgccccatgaggtataaagactatatttgcattccgaaaccctttca 542
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 679 gcttacccacatctgccccatgaggcataaagactatatttgcattccgaaaccctttca 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 938
Length adjustment: 10
Effective length of query: 532
Effective length of database: 928
Effective search space: 493696
Effective search space used: 493696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
