Query= MSMg01no081_k17.b1 MSMg01no081_k17.b1 CHROMAT_FILE:
MSMg01no081_k17.b1 PHD_FILE: MSMg01no081_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:57 2005
(424 letters)
>mm_chr8_122001102_122001924
Length = 823
Score = 731 bits (378), Expect = 0.0
Identities = 399/406 (98%), Gaps = 1/406 (0%)
Strand = Plus / Minus
Query: 4 gaattctctttcctccccttctctgctatcctgcactgtggagtggccagaggggtgggc 63
|||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 gaattctctttcctcctcgactctgctatcctgcactgtggagtggccagaggggtgggc 514
Query: 64 ctcctgtccgcctttatcttctggctagccctgtgtgacctgctggacccttatccagag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctcctgtccgcctttatcttctggctagccctgtgtgacctgctggacccttatccagag 454
Query: 124 cctcagggccatcctagaagggttggtttccagaaggagccctgcagagagtctgagaac 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cctcagggccatcctagaagggttggtttccagaaggagccctgcagagagtctgagaac 394
Query: 184 ttattagctcttcgaggcaggtagtggccagactgcctgtcatcattgagaaggtttgca 243
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 393 ttattagctcttcgaggcaggtagtggccagactgcctgttatcattgagaaggtttgca 334
Query: 244 gccctggtcaagggggcttgagccccagagagtctcatttgtcattactaggtagtgaca 303
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 333 gccctggtcaagggggcttgagccccagagagac-catttgtcattactaggtagtgaca 275
Query: 304 gatcaggggtagtaagtgcctgagtgaaggatgctgggaggctctgccattgggaaggtg 363
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 274 gatcaggggtagtaagtgcctgagtgaaggacgctgggaggctctgccattgggaaggtg 215
Query: 364 aacgatggaactctgtgtgtgtgtcctgtctgtctgtctgtctgtc 409
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aacgatggaactctgtgtgtgtgtcctgtctgtctgtctgtctgtc 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 424
Length of database: 823
Length adjustment: 9
Effective length of query: 415
Effective length of database: 814
Effective search space: 337810
Effective search space used: 337810
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no081_k17.g1 MSMg01no081_k17.g1 CHROMAT_FILE:
MSMg01no081_k17.g1 PHD_FILE: MSMg01no081_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:30:57 2005
(502 letters)
>mm_chr8_121810039_121810941
Length = 903
Score = 913 bits (472), Expect = 0.0
Identities = 496/504 (98%), Gaps = 3/504 (0%)
Strand = Plus / Plus
Query: 1 ctgccgaatcacagcctccaaagatggtaaatggcgtcaagagaaacaacagcaccactg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgccgaatcacagcctccaaagatggtaaatggcgtcaagagaaacaacagcaccactg 260
Query: 61 gacaccagcctgaaaatttgggttgcttagttcag-gtttatttatgttctgaactgagt 119
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct: 261 gacaccagcctgaaaatttgggttgcttagttcagtttttatatatgttctgaactgagt 320
Query: 120 tgcgtcgcgtgggaataaaatacggtccatttaaaatcctcattattttaaatctattga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgcgtcgcgtgggaataaaatacggtccatttaaaatcctcattattttaaatctattga 380
Query: 180 accacaagtcattcctggatccaccgtgaacctgtcacctggaaaatgagaagcaaatgt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 accacaagtcattcctggatccaccgtgaacctgtcacctggaaaatgagaagcaaatgt 440
Query: 240 cagctttctttgtgtgctc-tagccgcacagtgagtccccactggaaaagatgcagccag 298
||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 cagctttctttgtgtgctcct-gacgcacagtgagtccccactggaaaagatgcagccag 499
Query: 299 cgagctgaaggcatgcttagctgtgcacacctccagtcccaggacttggaaagccaagat 358
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 500 cgagctgaaggcatgcttagctgtgcacacctccagtcccagcacttggaaagccaagat 559
Query: 359 ggaatttgtgagttcgaggccagtgtgctctacagagtaaaaccccattccaaacaccag 418
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 560 ggaatttgtgagttcgaggccagtgtgctctacagagtaaaaccccgttccaaacaccag 619
Query: 419 gggctgggatgaagtcaatggtagagcgcaagtctagcgtgcacagatctccgtgttcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gggctgggatgaagtcaatggtagagcgcaagtctagcgtgcacagatctccgtgttcaa 679
Query: 479 tctgactgctccatcattcaccag 502
||||||||||||||||||||||||
Sbjct: 680 tctgactgctccatcattcaccag 703
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 502
Length of database: 903
Length adjustment: 10
Effective length of query: 492
Effective length of database: 893
Effective search space: 439356
Effective search space used: 439356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
