BAC Information

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BAC

Clone NameMSMg01-081L21
Chromosome8 (Build37)
Map Location 7,799,437 - 7,799,716
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665127, EG546032
Downstream geneLOC100039836, Efnb2, 9430010O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-081L21.T7 (MSMg01no081_l21.b1)MSMg01-081L21.TJ (MSMg01no081_l21.g1)
ACCAG302274AG302275
length720721
length of high quality
(start - end)
334 (46 - 379)279 (74 - 352)
definitionCHROMAT_FILE: MSMg01no081_l21.b1 PHD_FILE: MSMg01no081_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:03 2005CHROMAT_FILE: MSMg01no081_l21.g1 PHD_FILE: MSMg01no081_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGATTTT
CTGGAGTCCACCTTCTTGAGATCTTTATATATATTGGATATTAGTCCCCT
ATCTGATTTAGGATAGGTAAAGATCCTTTCCCACTCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTATCTTTTGCCTTGCAGAAGCTTTACAACTTTATG
AGGTCCCATTATTGATTCTCGATCTTACAGCACAAGCTATTGCTGTTCTA
TTCAGGAATTTTTTCCCTGTACCCATATCTTTGAGGCTTTTCTCTACTTT
CTCCTCTATAAGTTTCAGTATCTCTGGTTTTATGTGGAGCTCCTTAATCC
ACTTAGATTTGACCTAAGCACAAGGAGATAGGAATTGATCAATTCTCATT
CTTCTACACGATAACTGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCT
GTCTTTCTTCCACTGGATGGATTTAACTCCCTTGTCAATGATCAAGTGAC
CATATGTGTGCGGTTCATCTCTGGGTTTTCAATTCTGTTCCATTGGTCTA
TGTGTCTGAAGCTAAACCATTACCCTGCATTCTTCTTTTTTCAATTGTTC
TGTTAATACGCTTTTGTTCAGGCATGGTCGATTCCACCAAAATTCCTTTT
ATTCTTGAACACAATTTTTT
NCGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTGAGGTTATATAATGCGAGCTGGATG
CTTGTCCAAGTACACTCATTTAGAGAAAGAAATGTGAAAAATCTTCAACT
GCAAAGAGTGTGGCATTCAAAGATTATGCAGTAAACACAGAGAACAATCA
TTTCCAATGAAAAGGTTTAACTGCCAAAAAATTGTAGAAAATTACTGTCT
CCAGTGACCTGATTCAATGCGTAGATTTCATTTGTGTTTTAGTCTTTGTC
TTTCTTACATTGTTCCATATGTCATGAAGCTGGAGACAGGAAGCGAGTGT
GGGGACAGGAATGCTCGTGCATCCCCTGCAGGCCTGTGGGTTGACAGGGG
ATCAGGCCTTTGGCTCTGCAGAGCTCTCCTTGTTATTTTCTTCCCTGTCC
TGCTGGCTCCACTTGTACTATGAAGCTGCACCCCAAGCAGGCACGAATCA
AAGGAATCAGTGTCTGCAGAATGTGTTCTGTTTTGTATAACTCCTTTTTA
TTCTAATTTAATTTTACATTATGGAAAAGTTCATATAAGTAGGCACTAAC
TTCCCCTTAGCTCTGCTCTTCATTTGCGTTCATTTAATGCGAGAATCTCC
CTTAACCCCAGTATATTCCCTGATATCCAAAAATAAACCCCATTAACGCA
TTAACTGCCTGTTCCCTCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no081_l21.g1 MSMg01no081_l21.g1 CHROMAT_FILE:
MSMg01no081_l21.g1 PHD_FILE: MSMg01no081_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:03 2005
         (279 letters)



>mm_chr8_7799237_7799916
          Length = 680

 Score =  526 bits (272), Expect = e-154
 Identities = 278/280 (99%), Gaps = 1/280 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgagg-ttatataatgcgagctggatgcttgtccaagtacactcatttagagaaagaaa 59
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ttgaggtttatataatgcgagctggatgcttgtccaagtacactcatttagagaaagaaa 421

                                                                       
Query: 60  tgtgaaaaatcttcaactgcaaagagtgtggcattcaaagattatgcagtaaacacagag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 tgtgaaaaatcttcaactgcaaagagtgtggcattcaaagattatgcagtaaacacagag 361

                                                                       
Query: 120 aacaatcatttccaatgaaaaggtttaactgccaaaaaattgtagaaaattactgtctcc 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aacaatcatttccaatgaaaaggtttaactgccaaaaaattgtagaaaattactgtctcc 301

                                                                       
Query: 180 agtgacctgattcaatgcgtagatttcatttgtgttttagtctttgtctttcttacattg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 agtgacctgattcaatgcgtagatttcatttgtgttttagtctttgtctttcttacattg 241

                                                   
Query: 240 ttccatatgtcatgaagctggagacaggaagcgagtgtgg 279
           |||||||||||| |||||||||||||||||||||||||||
Sbjct: 240 ttccatatgtcaggaagctggagacaggaagcgagtgtgg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 680
Length adjustment: 9
Effective length of query: 270
Effective length of database: 671
Effective search space:   181170
Effective search space used:   181170
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)