BAC Information

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BAC

Clone NameMSMg01-082B02
Chromosome8 (Build37)
Map Location 66,516,520 - 66,516,663
singlet/doubletsinglet
Overlap geneTll1
Upstream geneSpock3, LOC384831, EG244495
Downstream geneLOC100040989, Cpe, Sc4mol, Klhl2, LOC100040903, LOC619647, 3110005G23Rik, Trim75
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-082B02.T7 (MSMg01no082_b02.b1)MSMg01-082B02.TJ (MSMg01no082_b02.g1)
ACCAG302523AG302524
length698888
length of high quality
(start - end)
148 (71 - 218)---
definitionCHROMAT_FILE: MSMg01no082_b02.b1 PHD_FILE: MSMg01no082_b02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:27 2005CHROMAT_FILE: MSMg01no082_b02.g1 PHD_FILE: MSMg01no082_b02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:31:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGATGTACCCAATACATTTGATATCTATAAGTAAATGTGATC
AAGAAAATTTTTATTCTCAACACTACTAACTGAATAGCTTTCTATTAAGC
CCATTTGGTGTCAACAGATCATTGTGTCAATCAGCACCTTGGACAGGAGT
AAAACACTAAGCTGTCCCTAGAACAGAGCCATGCTGTCATCTCAGCATCT
AACATCCTTCATCTGAGTAACTGAGACAGTTCTGGAATGCAAATGTATAT
GTTGCATAGCACTTATACATTAAATAACTAAAATCTACAACAATAGCTAT
ACATTTGCAAACATTACCCATTTCCCCCCACACATGCTCACATGACATTA
TTACATTACCAAACAACTCCAACCATAAACCATCTTACTTTTCATATTTT
CCTATCTCATATACTCCTATTTTCTTATCACATTGTTACACAAACATACA
TAAATTCCCAATATCGTTAATCATATATATATTCAATATTTAATTTCCTT
ATACAATTCATACATTTAATATAAAACACCCCCTAACCCATACCATCCTC
CCTTCTTATTCTTTTTCCATTTTATCTACTACCACTATTCCTTTCCTCAC
CCCTTATCTCCCTTTTTCTCTCTACTCTTCACTTCTTTCTCCCTTTTA
AAGGATAAAAAAATAANNAATATAATTCGTTAATAACTTTCTTTNGANGG
ATTATTAGATGCAAAAAATGTTAATTCCGTGTTCCTTGGGTTTTTCGCCG
GTGTTTTTTTCTTTGTTTCTTTTCCGGTCCGTTCCGGCGCTGGTCTCTTA
CGCCGTTCTGTCGGCGCTGTCTCGCTCTTCGTGTGTTCGGGCTTGGCCAA
TCGTTTGCCGCTATCTTTTGTTTTTGGCGGTTTCGTGGTGGTTGTTCGGT
TATGTTTTTTTTTGTGTTGTTTCTTAGTGTTTTAGCTTTCTTTGTTTTGG
TGGCCGTGCCGGGTGTGGGGTCCGTGTTCGGTCTTCCTTTCTTGTGGCGC
CCCTTTTGTTTTTTCTTCTTTCCGCCCTCTTCTGTCTGGCTGGTCTTGTG
TGCCTTGGTTCTTGCCTCTTCCTTCTCTTTTCTCCCGTCCTCCGTGCTCT
CTCCTTTTCCTGGCCTGCGGGGCCTCCGTTCTCCCCGTGGCGGCGCTCGC
GGCCTTCGGTCCGTCGGCCCGGCCCGGTCCGGGCGTCGGTCCGTGCCCGC
TGCGCCGCTGGCGGGGCGGGCGGTGCCCGCGTCTGTTTGCCGCTGGTTTT
TTTNNNNNNNNNNNGGAAAACTGCCCATAGATTCGCTCNTTAGCNNCCNT
TGTAGCCCGAAAACGCAACNGGGGNATAGAGATTTAGGAGACGGGGTGNT
AGGGTNTGCACACTCTCTTATTCGGGGAAGGGGGCTAACTTGGTGCCGCN
GGAAAGATTCCCGAAGGGCTAATCCCCCTTGGACCNGCCNGCCCCCTCCC
TATCGCCTTCCTCCTGTAATAAAGCCGCNGGCTTATCCTACCGTAGCTCG
GAAGGGCCCCAACTCGCNCCTTTTCTCGGCATCTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no082_b02.b1 MSMg01no082_b02.b1 CHROMAT_FILE:
MSMg01no082_b02.b1 PHD_FILE: MSMg01no082_b02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:31:27 2005
         (148 letters)



>mm_chr8_66516320_66516867
          Length = 548

 Score =  263 bits (136), Expect = 3e-75
 Identities = 142/144 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacatttgatatctataagtaaatgtgatcaagaaaatttttattctcaacactactaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 201 tacatttgatatctataagtaaatgtgatcaagaaaatttttattctcaacactactaat 260

                                                                       
Query: 61  tgaatagctttctattaagcccatttggtgtcaacagatcattgtgtcaatcagcacctt 120
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 261 tgaatagctttctattaagcccatttggtgtcaacggatcattgtgtcaatcagcacctt 320

                                   
Query: 121 ggacaggagtaaaacactaagctg 144
           ||||||||||||||||||||||||
Sbjct: 321 ggacaggagtaaaacactaagctg 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 548
Length adjustment: 8
Effective length of query: 140
Effective length of database: 540
Effective search space:    75600
Effective search space used:    75600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)