BAC Information

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BAC

Clone NameMSMg01-083E22
Chromosome8 (Build37)
Map Location 125,363,406 - 125,363,604
singlet/doubletsinglet
Overlap geneLOC100043225
Upstream geneSlc7a5, BC048644, Car5a, Banp, Gm22, Zfpm1, Trhr2, 5830416A07Rik, Il17c, Cyba, Mvd, Snai3, Rnf166, 2310061F22Rik, Cdt1, Aprt, Galns, Trappc2l, Pabpnl1, Cbfa2t3h, C230057M02Rik, A530010L16Rik, BC021611
Downstream geneCdh15, Ankrd11, Spg7, Rpl13, Cpne7, Sult5a1, LOC100043251, Dpep1, Chmp1a, 4732415M23Rik, Cdk10, Spata2L, 1300018I17Rik, Zfp276, Fanca, Spire2, Tcf25, Mc1r, Tubb3, Def8, Afg3l1, Dbndd1, Gas8, Rn5s-ps1, Rhou, LOC100042484, LOC100042490, Rab4a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-083E22.T7 (MSMg01no083_e22.b1)MSMg01-083E22.TJ (MSMg01no083_e22.g1)
ACCAG303468AG303469
length749711
length of high quality
(start - end)
263 (42 - 304)388 (70 - 457)
definitionCHROMAT_FILE: MSMg01no083_e22.b1 PHD_FILE: MSMg01no083_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:00 2005CHROMAT_FILE: MSMg01no083_e22.g1 PHD_FILE: MSMg01no083_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:33:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTGTATCCCTGGTCAGGCGGGAGGTTTAATAAAGTAGAGGTGTCAGCCTG
GCTAATTTTCAGGGATAGACTACAAAAGAGAAATTCATCTGCATATTGTA
TAAGCTTGGGTTTAGGCAGAGACAAAGATAGTAAATCAGAGGCCAGAGCC
TGGCCAAGTAAACTCGGGCTGTCCCCAAGCCCCTGGGGTAGGACTGTCCG
AGTGAGCTGGTGTCCCCAAGCCCCTAGGGTAGGACTGTCCGAGTGAGCTG
GGTAGGATGGTGTTTGTACTTGTTTTTCCATTTCATCCAACGTTATCTTG
CTTTTTTCTTTTTTTATTATTGTTTTTCCCTTCCTTTTCCTTTTTATTTC
TTATTGATTTCCCACTTTTCCACATCTCTCCTTTCTTTTTTTTTTTTACT
TCCCCCCCTATATTTTATTACCTTTTTTATTTTCCGATTATCTCCTTTCC
CCTTCTCCATTTTAACCTTTTAATCCTTCGTCTCATCATTTTTTTTTTTT
ACTTTCCCCATTATATATTCCTTCTCATTCTCCCCTTTTCCACTCTCCTT
TTCTTTTTTCTTTAAACCTCATGTTGCCAATGTAAGACTTTTATTCGTCT
TATCCACCTCTACTTATTTATCTATCTCACCGCAATCCTTTCTTTCACAC
CATTTTTTTCGTTTCTTTATTTTCCCCTATTCCCTTACTCCTTATTTCG
AATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTGTAGAGGCAGGAGGATCAGAATTGCAAGGG
TTACACACTGAGTTTGAGGCCAGCATGGACTACAGGAGACACTGTCTCAA
AAGAAATCAATGTAATTTTTATCTGTCACAAATTGTTCTCTTTTTAATTA
ATTAAAAAAATTTAATCTACCTGGTGTTTTGCTCACACGTGTGTCTGTGT
ACCACATGCATGCCTAGTGCCCCTAGAAGCCAGAGAGCGTGTGGAGGTGG
GTTACAGACAGTTGAGCTGCCATGAGGCTGCAGGGAGTTGAATCCAGGTC
CTCTGGAAGAGCTTGAATCATAAAAACATTTTGTTTCAGTTAACATACAG
ATGTAAACCCCCCCTAGATAATAGACTGTTATTTTATTTTTTAGAATATA
TTTGACCTTATGTCCCTAAATAAGATCTCAGACTCTTGTCACATTGGCGA
AATGTAATGTTCTGGTTTCGCTGAAATTTTGATACTTAATATTTTATTAA
TTTCTATTCACTTGTTAATTTTTAAATCAACAATATTATTTAAAATAATC
TTATTAATTTTCTTCTTTTTAAAATAATAATTATTAATTTTTTATTTATT
TCACTATTTCCTTTTATTCTTCTATTTTTTCATTTTTATTAATTATTCCT
TTTTTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no083_e22.b1 MSMg01no083_e22.b1 CHROMAT_FILE:
MSMg01no083_e22.b1 PHD_FILE: MSMg01no083_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:33:00 2005
         (263 letters)



>mm_chr8_125363202_125363865
          Length = 664

 Score =  346 bits (179), Expect = e-100
 Identities = 194/199 (97%), Gaps = 1/199 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtatccctggtcaggcgggaggtttaataaagtagaggtgtcagcctggctaa 64
           |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct: 205 gaattctgtatccctggtcaggtgggaggtttaataaagtagaggtgtcagcctggctga 264

                                                                       
Query: 65  ttttcagggatagactacaaaagagaaattcatctgcatatt-gtataagcttgggttta 123
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 ttttcagggatagactacaaaagagaaattcatctgcatatttgtataagcttgggttta 324

                                                                       
Query: 124 ggcagagacaaagatagtaaatcagaggccagagcctggccaagtaaactcgggctgtcc 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 325 ggcagagacaaagagagtaaatcagaggccagagcctggccaagtaaactcaggctgtcc 384

                              
Query: 184 ccaagcccctggggtagga 202
           |||||||||||||||||||
Sbjct: 385 ccaagcccctggggtagga 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 664
Length adjustment: 9
Effective length of query: 254
Effective length of database: 655
Effective search space:   166370
Effective search space used:   166370
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)