BAC Information

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BAC

Clone NameMSMg01-084D05
Chromosome8 (Build37)
Map Location 47,294,837 - 47,295,115
singlet/doubletsinglet
Overlap geneSlc25a4
Upstream geneF11, Klkb1, Cyp4v3, BC035537, Tlr3, Sorbs2, Pdlim3, Ccdc110, 1700029J07Rik, 1810047C23Rik, Ankrd37, Lrp2bp, Snx25, 4933411K20Rik
Downstream geneLOC621269, LOC100039875, LOC667325, Helt, LOC667337, Acsl1, Mlf1ip, Ccdc111, Casp3, Irf2, Enpp6, Stox2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084D05.T7 (MSMg01no084_d05.b1)MSMg01-084D05.TJ (MSMg01no084_d05.g1)
ACCAG304123AG304124
length696696
length of high quality
(start - end)
376 (45 - 420)287 (74 - 360)
definitionCHROMAT_FILE: MSMg01no084_d05.b1 PHD_FILE: MSMg01no084_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:10 2005CHROMAT_FILE: MSMg01no084_d05.g1 PHD_FILE: MSMg01no084_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATCTGAATGTCCAAAGCCAATGACATGAAGACATTTTATGAGTAA
GGCTTTATATATGCACACCTCTGCTGGTGTTTACTTTTACTGATTTATTT
TTGACAGGGTCTCTTGTAGCCCAGGCTAGCCTTGAATTAGTTATGCAGCA
TTAGGATAACACTCAAGTCCTGATCCTCCTGCCTTCGTCTCCCAGTTCTG
GGATTAAGGATATGCACCAGTGTGCCCCCATTTATAGGCTACTTTTGAAT
CAAATACAGGCTTCATGCATCCTGGATTAATAATTTACATTCTGGTCTCC
ATGTTGGCTTTTTAAAAGGCTCCTGGAGGGAAGCATGATGGTGCACTACA
TAAAAGCAGTACTTACAGGCAGAGTCAAGGGGGTCAGGAGTTCTGATCCA
GTTTAGGCTGTAAGATCCTGTCTTTAAATAAAACACTAACAGCCAACCAA
CAAAAAGATGATGCCAGATCATGATTTCAAGGTCTGCAAGGGCCACTGAT
TGAAGTCTACGCCAGCCTTCATAACTTATTAAAGGGAGTGCCCTGGGTCT
GCTTCTCTTTAGGACAGCACTATCTGCTCGAGAGCCTGAGTGCGCTGTGA
CCCTGTGATTCTCGCCTTTCTATCCTCATTTTCACCTATAGCTGGA
AATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCCCTTGTCACTTGAAAGTGAAAGATG
GGCGAGGAACCCTGGGCATAGCAGTGCACATTTATAATCCCAGCATTTGG
GAGGCAACACAGGATGATTTTTTAGTTCCAGGCTAGCCTGGGCTATATAG
GATGACCCTATCCTTTCAAAACAAAAATAAGAAAATAAAAACTGAGGAAA
TACAAATCCTTTTTCCCCCTCTGTCTTCCCTTCTCTCTGCCTGTCCTCTG
CCACCCCTTCCTCCCTCCCACCCCAAACTAGGTCCAGCATGCCAGCAAAC
AGATCAGCGCATAGAAGCAGTACTAAGGCATCATTGATTGTGTCGTGAGA
ATCCCCAAGGAGCAGGGCTTTCTCTCTTTCTGGAGGGGTAACCTGGCCAA
CGTGATCCGGTACTTCCCCACTCAAGCCCTGAACTTCGCCTTCATTGACA
AGTACTAGTAGATCTTCCTGTGACGTTTGCATCGCCACAAGCCGCTCTGG
CGCTACTTTGCTGGTAACCTGGCCTCTGGTGGGGCAGTTGGGTCCACCTC
CCTCCGCTTCGTCTACCCGCTGGACTTTGCCTAGTATCAGTTTGCCTGCC
TTATTGCTCCCCGGCATTTTCCCATCGTATATTCCCTGTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_d05.g1 MSMg01no084_d05.g1 CHROMAT_FILE:
MSMg01no084_d05.g1 PHD_FILE: MSMg01no084_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:10 2005
         (287 letters)



>mm_chr8_47294474_47295160
          Length = 687

 Score =  526 bits (272), Expect = e-154
 Identities = 279/284 (98%), Gaps = 5/284 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcccttgtcacttgaaagtgaaagatgggcgaggaaccctgggcatagcagtgcacattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tcccttgtcacttgaaagtgaaagatgggcgaggaaccctgggcatagcagtgcacattt 583

                                                                       
Query: 61  ataatcccagcatttgggaggcaacacaggatgattttttagttccaggctagcctgggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 ataatcccagcatttgggaggcaacacaggatgattttttagttccaggctagcctgggc 523

                                                                       
Query: 121 tatataggatgaccctatcctttcaaaacaaaaataagaaaataaaaactgaggaaatac 180
           ||||||||||||||||||||||||||||||||||||||     |||||||||||||||||
Sbjct: 522 tatataggatgaccctatcctttcaaaacaaaaataag-----aaaaactgaggaaatac 468

                                                                       
Query: 181 aaatcctttttccccctctgtcttcccttctctctgcctgtcctctgccaccccttcctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 467 aaatcctttttccccctctgtcttcccttctctctgcctgtcctctgccaccccttcctc 408

                                                       
Query: 241 cctcccaccccaaactaggtccagcatgccagcaaacagatcag 284
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 cctcccaccccaaactaggtccagcatgccagcaaacagatcag 364


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)