BAC Information

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BAC

Clone NameMSMg01-084E17
Chromosome8 (Build37)
Map Location 120,622,939 - 120,623,063
singlet/doubletsinglet
Overlap genenone
Upstream geneBcmo1, Gan, 4933407C03Rik, Plcg2, 4632417N05Rik, Hsd17b2, Mphosph6
Downstream geneCdh13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084E17.T7 (MSMg01no084_e17.b1)MSMg01-084E17.TJ (MSMg01no084_e17.g1)
ACCAG304191AG304192
length731723
length of high quality
(start - end)
67 (66 - 132)126 (129 - 254)
definitionCHROMAT_FILE: MSMg01no084_e17.b1 PHD_FILE: MSMg01no084_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:17 2005CHROMAT_FILE: MSMg01no084_e17.g1 PHD_FILE: MSMg01no084_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAGATCCGCGGAATT
CCGGTCATGCCCAGCCCAGTCTTTGTTCTGCCCTTGGAGTGTTGGTTTTC
TGAGTTTTGTTGTTGCTAGCCATTCCACATAAACTTTCATATCATGTATC
ACCAGTGCCTTGCTCGGCCATTGTACTGGCTAGTTTTGTGTCAACTTGAC
ACAGCTGGAGTTATTACAGAGAAAGGAGCTTCAGTTGACGAAATGTCTCC
ATGAGATCAAACTGTAAGGCATTTTCTCAATTACTGACCAAGGCTGAAAG
GCCCCTCGCGGTTGGTATCATCTCTGTGCTGCTAACTAGTATTCTATAAT
ATAGTATGTTGAGCAAGCCAGTTGAATCATGACAACAATGAATTTCCCTC
CTTGTACTCTGCATCAATTTCTGCTTCCTGACCTGCTTGATAATAAGTCC
TGAAATCCTTAGTGATAAATAACATCATGTAATTGTAACTCTAATAAATC
CTTTTCCTCTCAAAATAGATTACTTGTATATGAAGTCTGTTGCATTTATT
CATCTATCGAAATATAACTAGTATCATTCATAAAATCTTCTACCTTGATA
TTACAGGTTCTTATGACTTTAACACTTACTGACTTTACTCCTATATTACC
CGTAAATTGTATCTCTCATACACTAAGTACGCAAAACCCACATCAAATCT
AAACGCACAACACCATTAATTCAAAAATACT
ATGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCGCTGAGAATCATGGAGGCTGTGAAGGCC
TGGGATAGCACTGCATATCGAGCCCTGATGATGCTCATGGCTGTGTTATG
GGAGACCTATAACACCTGGACCATGTGGAGGCTAGAGGCTGGCTCCAGTC
TATCAATATCCAGCCTTTGAGAGGGTAAAGCTCTGCACATTGAATGACCC
TGTATTCCGCCTGTAACAATATCAATGCAGAAGCCTTATTGAACCTACCA
TCTCCTCAGTATCTCCCTTCCCCCTCATCTCCCACCTCCCGGGTACCTAT
TGGTACATATTCCAGGGCCTTCCTTCATTATTAATCTTTATTCATTTCCC
GTATCATACATGTTTGGCATCATCTGTAACATTATTTTGTTAGCTTCTTT
GAGACAGTTTGAGGTATGATTAACTATATATAGCTTGCCCACGCTGATGT
GCACAGAATTTGTGTATAATCTTAGTGGTCTGAGGCTTATCTTATCTCCA
GCTTATGTCATTATCCTTTTCCCTGAGGTATGAACTAATCTAAGTTATTT
TGTCTGTATCATTTATTTATTATTTACTCTCTATTACGTTCTTGATTTTT
TAATTGATTTTATTTTTCATGTTTTATTGTATAATTGTATATTGTTTCAC
TTTTTCTTTTCATTGTTGTCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_e17.g1 MSMg01no084_e17.g1 CHROMAT_FILE:
MSMg01no084_e17.g1 PHD_FILE: MSMg01no084_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:17 2005
         (126 letters)



>mm_chr8_120622738_120623263
          Length = 526

 Score =  226 bits (117), Expect = 3e-64
 Identities = 123/125 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   gatgctcatggctgtgttatgggagacctataacacctggaccatgtggaggctagaggc 61
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 202 gatgctcatggctgtgttatgggagacctagaacacctggaccatgtggaggctggaggc 261

                                                                       
Query: 62  tggctccagtctatcaatatccagcctttgagagggtaaagctctgcacattgaatgacc 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tggctccagtctatcaatatccagcctttgagagggtaaagctctgcacattgaatgacc 321

                
Query: 122 ctgta 126
           |||||
Sbjct: 322 ctgta 326


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)