BAC Information

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BAC

Clone NameMSMg01-084N13
Chromosome8 (Build37)
Map Location 114,746,695 - 114,747,118
singlet/doubletsinglet
Overlap genenone
Upstream geneGlg1, Rfwd3, LOC547023, Mlkl, Fa2h, Wdr59, Znrf1, Ldhd, Zfp1, Ctrb1, Bcar1, Cfdp1, Tmem170, Chst5, 4932417I16Rik, Gabarapl2, Adat1, Kars, Terf2ip, EG627828, LOC672498
Downstream geneLOC100042040, Cntnap4, LOC100042061
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084N13.T7 (MSMg01no084_n13.b1)MSMg01-084N13.TJ (MSMg01no084_n13.g1)
ACCAG304588AG304589
length749715
length of high quality
(start - end)
44 (62 - 105)423 (69 - 491)
definitionCHROMAT_FILE: MSMg01no084_n13.b1 PHD_FILE: MSMg01no084_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:59 2005CHROMAT_FILE: MSMg01no084_n13.g1 PHD_FILE: MSMg01no084_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXATTTCCAGAGAATCCGCGGAATTCCCA
ATAATCCCCAAAATGAGTTGGTCGCACTTAAAGCTATTTATCATGTCAAT
TTTCAACAACACACTACTACAGAGAAATCAGGGTGATGAGTTTCTCCAGA
CTCAGAGCACAGCTTCTACAGCAAGCACCTGTCTCTCCCTGAGCATCTGC
CCACCCCCATCTCCTTCTCTGCCTGAAGTACGTCAAAATTGACCTCCAGA
CATTACAGCCTTTACCTGACATATATCTGAATTTATTTTTCAGCTCCGGA
CCATACTGGCTCATAGTTTGTTAGGTAGGTGTCTGACATCACAGCCTTTG
CTCACTGATAGCTGTCTTCTCCCTGTATTGTGCGCCCTCTCCTATCCTTC
CTCCCCCCCCTTCTGCTTCATCCCTCCTCCTTTCTTTTCTTCCTATTCTT
TTCCATTCCTCTTCTCACCATTCTTGTTAACCTTGCCCTACTGTTTCCGA
CTGTCTTACCTTCTTTAACTTCCCCATACTAACTGCCTTTTCTATCTAAC
TTTCGGTCCTCTTTCTATCCTCCCTCTTCATTGCTTGATTTTCCTATCTC
CTCTATTTTCTTTCCCCCCTTTATTTGTATTCACTTTTTTCCTCCTCATC
TTTTCCCTCTCTCTTCTTATTTAACCAACCCCTTAAACTCTTTCACCTTC
TTTTATTCCCTTTTACCCCGTCTCCCTCCTTTCTCACTCTCTCCTCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTGATTCTTGCTTTCTGAATAATGGGGCTT
ATCAAACTCTCATAAAGCACTTTGGATCCTGGACCCGAAGCTCTAAAGAA
CCCTAATAACTAAATAAAATTTAAATACCATTAACACTTCCCATAATTAT
CACAAAGAGCCAGAGATGTTTTAAATGTCAACAAATCAAGTTGGCTGTTT
TGTTCTGTATTTCGGCTAAGATGTTAACAGACAGGAATCCAGCTAAAACC
CTGCACGAAATACATTTTTTTGTTTTAATTTTTTTTCAAACCTCACATTC
TTTAGCTCAGGAGGATATAAGTACAAGGGCGTGTTAGAGTATTTTATTAG
CTTTTAGACTGAGAGTCAGCTTTGCGAATTACCTAATTATACTCAACCAC
GATGGCGTTGACATTCTGTGGAATCGCTACAGAGCAGGTTCTCATGTGAT
ACGTGTGCCGCGTGCGCTGGGGCTTAAGCTGACATTCTCTCTGTTCTAAT
GTCTGGGTAATTTGTAGACGGCTGTAAATATAATTGCCACGGGAGTACAA
AGTGTAATTCTTTTCCTAAATAACAATACTGTACGCTCTCCCTCTTACTC
TCTCTCCAACTCCCTAAGCTTTCACCTCTCGTACTCCCCTAGTTCTTTTC
TCCCTTCTTTTTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_n13.g1 MSMg01no084_n13.g1 CHROMAT_FILE:
MSMg01no084_n13.g1 PHD_FILE: MSMg01no084_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:59 2005
         (423 letters)



>mm_chr8_114746495_114747318
          Length = 824

 Score =  781 bits (404), Expect = 0.0
 Identities = 419/424 (98%), Gaps = 1/424 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgattcttgctttctgaataatggggcttatcaaactctcataaagcactttggatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgattcttgctttctgaataatggggcttatcaaactctcataaagcactttggatc 260

                                                                       
Query: 61  ctggacccgaagctctaaagaaccctaataactaaataaaatttaaataccattaacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctggacccgaagctctaaagaaccctaataactaaataaaatttaaataccattaacact 320

                                                                       
Query: 121 tcccataattatcacaaagagccagagatgttttaaatgtcaacaaatcaagttggctgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcccataattatcacaaagagccagagatgttttaaatgtcaacaaatcaagttggctgt 380

                                                                       
Query: 181 tttgttctgtatttcggctaagatgttaacagacaggaatccagctaaaaccctgcacga 240
           ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tttgttccgtatttcggctaagatgttaacagacaggaatccagttaaaaccctgcacga 440

                                                                       
Query: 241 aatacatttttttgttttaatttttttt-caaacctcacattctttagctcaggaggata 299
           |||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 441 aatacatttttttgttttaatttttttttcaaacctcacagtctttagctcaggaggata 500

                                                                       
Query: 300 taagtacaagggcgtgttagagtattttattagcttttagactgagagtcagctttgcga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taagtacaagggcgtgttagagtattttattagcttttagactgagagtcagctttgcga 560

                                                                       
Query: 360 attacctaattatactcaaccacgatggcgttgacattctgtggaatcgctacagagcag 419
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attacctaattatactcaaccgcgatggcgttgacattctgtggaatcgctacagagcag 620

               
Query: 420 gttc 423
           ||||
Sbjct: 621 gttc 624


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 824
Length adjustment: 9
Effective length of query: 414
Effective length of database: 815
Effective search space:   337410
Effective search space used:   337410
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)