BAC Information

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BAC

Clone NameMSMg01-086C15
Chromosome8 (Build37)
Map Location 40,329,247 - 40,329,492
singlet/doubletsinglet
Overlap genenone
Upstream geneTusc3, LOC100038974
Downstream geneLOC632066, EG621335, LOC434304, Msr1, EG621431, LOC100039072, LOC666959, EG632166
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086C15.T7 (MSMg01no086_c15.b1)MSMg01-086C15.TJ (MSMg01no086_c15.g1)
ACCAG305551AG305552
length717706
length of high quality
(start - end)
504 (36 - 539)247 (58 - 304)
definitionCHROMAT_FILE: MSMg01no086_c15.b1 PHD_FILE: MSMg01no086_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:47 2005CHROMAT_FILE: MSMg01no086_c15.g1 PHD_FILE: MSMg01no086_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:37:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGAATCCGCGGAATTCTGTGA
AACTATACGTTTCTTGATGTAATGATTCTTAAATAATTAAAAGTTGAGAC
ATGGGGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACA
GCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACTGCACA
GCACAGCACAGCACAGCACAGCACTGCACAGCACAGCACACACAGCACAG
CACAGCACAGCCCACAGCACAGCACAGCACAGCACAGCACAGCACAGCAC
AGCACAGCACAGCACAGCACTGCACAGCACAGCACAGCACTGCACACACA
GCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACA
GCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGCACAGTCCT
AATGGCCCAGGTGTGTCTTAGAAACAACGCAATAACTGCACAGTAGTAGT
TCCAGATTAATGCTTGACTTGCAATGAAAGCTTGAAGAAATTATTAGAAA
AGGAAATAGAGCCAACATTGGGACTCCAAGAAAGAAAAAAATACTATTGA
AGCTATTAAATAAGCTTTGCACAACATTTGAGAGTGCCTCCCGGATAAGG
AACACAGAATATGTAATATCTTATATTAAGAAAACCAAGTCAAAACTGTG
TGACCCTTACGAGAGCT
GGGGGCCGCCTGGCCTGCCCATTCGGGNGAACTATAGAAGGATTGCAACA
ACAAGTTTCTGACAAGCCAAGACTCAGCCAGTAGAAAGGCCATGTAGGTT
GCTCCCTGTAATGCCCAAACTCTTTTGAGCATACAAGCATGTTCTGGGTA
CCAGAGATGCAGCTAGAGAATTTAATGTTTGCCCCGATGGGTTTGTTCTC
ATCTTGTTGCCATATCTTCTGTCTATGATGACATTCCTTGGATTTTCTAA
TGATGATGCCATCCCTATAGCTGCATATCTTGAAGTCATTAAATTGATTT
TCANGTCANTTTGACTCATAGCTGAGGATTGTGCTGACTCTATTTTGCTA
CCTCCGGATTTCAACATCAGAGAAACGCTGGAATGGTTAAAATATTTAGG
GACTCCAAAAATGCAAGAAATATATTTTGCATTTTAAAGTGGACACAAGT
TTAGGGGAATCAGCCATAGAATGGTATGGGTTATATATGAAATATCTACC
AAGGGTTTAAATATTGAGGACTGGTTGTTACATGCCATTAACTTTGGGGA
AATTAATGGATCTTGATGGCACTGGCCTAACCAGTGAATTATATTTCTTA
ATAGATTTCTTCCTATTTAATGGCACTTTTCTGACAAGCAATGATTGTTT
TTTTTTTAGAAGACAAACCTTAATCTCTGGAAGGATTATCCCCTTGACCT
GTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_c15.g1 MSMg01no086_c15.g1 CHROMAT_FILE:
MSMg01no086_c15.g1 PHD_FILE: MSMg01no086_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:48 2005
         (247 letters)



>mm_chr8_40329047_40329693
          Length = 647

 Score =  468 bits (242), Expect = e-136
 Identities = 245/246 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgacaagccaagactcagccagtagaaaggccatgtaggttgctccctgtaatgccca 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 tctgacaagccaagactcagccagtagaaaggccatgtaggttgcttcctgtaatgccca 260

                                                                       
Query: 61  aactcttttgagcatacaagcatgttctgggtaccagagatgcagctagagaatttaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aactcttttgagcatacaagcatgttctgggtaccagagatgcagctagagaatttaatg 320

                                                                       
Query: 121 tttgccccgatgggtttgttctcatcttgttgccatatcttctgtctatgatgacattcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgccccgatgggtttgttctcatcttgttgccatatcttctgtctatgatgacattcc 380

                                                                       
Query: 181 ttggattttctaatgatgatgccatccctatagctgcatatcttgaagtcattaaattga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttggattttctaatgatgatgccatccctatagctgcatatcttgaagtcattaaattga 440

                 
Query: 241 ttttca 246
           ||||||
Sbjct: 441 ttttca 446


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)