BAC Information

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BAC

Clone NameMSMg01-086J11
Chromosome8 (Build37)
Map Location 60,252,616 - 60,380,838
singlet/doubletdoublet
Overlap geneLOC100040711
Upstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634
Downstream gene4930431L04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086J11.T7 (MSMg01no086_j11.b1)MSMg01-086J11.TJ (MSMg01no086_j11.g1)
ACCAG305859AG305860
length760755
length of high quality
(start - end)
294 (130 - 423)245 (132 - 376)
definitionCHROMAT_FILE: MSMg01no086_j11.b1 PHD_FILE: MSMg01no086_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:23 2005CHROMAT_FILE: MSMg01no086_j11.g1 PHD_FILE: MSMg01no086_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,252,616 - 60,252,909)(60,380,595 - 60,380,838)
sequence
NNNNNTTCCTTCTTNNNCCCCNCCCCCTTCCCCTCCCCTTCCCCCCCTCC
CACNNNNNNNNGACTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCAGTTCTTACCACTTGCCTCGTATGCTCGACACT
CTAGGTTCAATTTCAAACACTGAAGAAAAAAATGGAAGTTTTCCATGTGA
AGATACGAAGCATACTTATATTTTGACAGCTACCTTCTTTTGAAATATTG
GCTTGCCATGGAAAGAAATGGTGTCAAGTTGACATTGGTTTCATGTTTCT
TAAAGAAATGTAGAGATAATGGGGCTAACACTGCTTTTTCATTGACTGTG
AGTCCATTTGCATCATGTGTTATTCATTTATTATATAAAGTTCTATGTTA
TCAATTCACAAAATAGTCCTGGAGCTTGCGTTATTCACGGAGGCTTCTGA
TAGAATGAATACATTTAAAAACAGTCAAGTGATTCTATTCATATATGTAA
ATAACAGTAGACACAGAAGCCAGTATATCATTATTGCCAAGGTACTCATC
CAATCTTGAAAAAGTATGAACCACACACTTAGTTCCCAATTGTTTTACAG
CATATTTTCCCCCAGTAAAAACATAAAAGGGTCTTTAAAATTAATTATTG
TTTTACTTCTGCCAGAGCTATTTCTCATCATGGAGAATTAGCAACTTCTG
CGATACATTAACTTTTTACCATCCCTCATTTCAGGAAAAGAATCTATGGG
CACTCGACCC
NNNNNNTTTCCCCTTTTTTTCCTTTTCCCTCNCCCCCCCTTCCCCCTTTT
ATTNNNNCACAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTCTTATGTGTCTCTGAG
GAAAAGGTAAAATCTTTACAGTAGGTAGCTTCTCAGATTCCCCATCAAGC
AGCAAAAAAGGGGGATGTAGAAGGTAATGTGTGGCTACCTGTTGAGGTGC
CTGAGCATGCAGTCTCTTCCCAAAGTGAGCAATCTGGGCACCTGGAAGTC
TGTCAGCTAGAGAGTCACAGACAGTGTTCTCAATATGGTTTCTGCCAGTG
TCTGTGAGGTTGGGGAATGGGTAGGTTTTTGCAGTAGGTACATGGGCAGA
AAACTGGTCTGGATGTTTTTTTTCCCGCCCTCCCCACAAAATGAGCACTA
AAGGGAGGTATTCCTTGCTGGGTTTTTTGATTCACTAATTTAGGTCTCAG
GCCATATCACTTGGACAATGTGTCAGGGGCAGAGGAGAGCAAATCACAGG
GTGTCTTCTCAGCATCTCATCTCCTTTGGGACTGCAGCCAACACCAAAGC
TTTATTTCTATCAGGATCCTTCACATGCCTAGGTTTCCTTATCTTTGTAG
CACAGGCAGATATGTCTCTTGACCCCCGATCCTCCTCTACATGAATGACT
TTCTTTTGCTCAGCTCTAAGGATTAGAAAACATTTGAGCTTACTGTATCG
CATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_j11.b1 MSMg01no086_j11.b1 CHROMAT_FILE:
MSMg01no086_j11.b1 PHD_FILE: MSMg01no086_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:23 2005
         (294 letters)



>mm_chr8_60252416_60253109
          Length = 694

 Score =  561 bits (290), Expect = e-164
 Identities = 293/294 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctcgtatgctcgacactctaggttcaatttcaaacactgaagaaaaaaatggaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcctcgtatgctcgacactctaggttcaatttcaaacactgaagaaaaaaatggaagt 260

                                                                       
Query: 61  tttccatgtgaagatacgaagcatacttatattttgacagctaccttcttttgaaatatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttccatgtgaagatacgaagcatacttatattttgacagctaccttcttttgaaatatt 320

                                                                       
Query: 121 ggcttgccatggaaagaaatggtgtcaagttgacattggtttcatgtttcttaaagaaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcttgccatggaaagaaatggtgtcaagttgacattggtttcatgtttcttaaagaaat 380

                                                                       
Query: 181 gtagagataatggggctaacactgctttttcattgactgtgagtccatttgcatcatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagagataatggggctaacactgctttttcattgactgtgagtccatttgcatcatgtg 440

                                                                 
Query: 241 ttattcatttattatataaagttctatgttatcaattcacaaaatagtcctgga 294
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattcatttattgtataaagttctatgttatcaattcacaaaatagtcctgga 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no086_j11.g1 MSMg01no086_j11.g1 CHROMAT_FILE:
MSMg01no086_j11.g1 PHD_FILE: MSMg01no086_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:24 2005
         (245 letters)



>mm_chr8_60380395_60381039
          Length = 645

 Score =  418 bits (216), Expect = e-121
 Identities = 237/244 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctcttatgtgtctctgaggaaaaggtaaaatctttacagtaggtagcttctcagattcc 60
           ||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||
Sbjct: 444 cctcttaggtgtctctgaggaaagggtaaaagctttacagtagatagcttctcagattcc 385

                                                                       
Query: 61  ccatcaagcagcaaaaaagggggatgtagaaggtaatgtgtggctacctgttgaggtgcc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 384 ccatcaagcagcaaaaaagggggatgtagaaggtaatatgtggctacctgttgaggtgcc 325

                                                                       
Query: 121 tgagcatgcagtctcttcccaaagtgagcaatctgggcacctggaagtctgtcagctaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgagcatgcagtctcttcccaaagtgagcaatctgggcacctggaagtctgtcagctaga 265

                                                                       
Query: 181 gagtcacagacagtgttctcaatatggtttctgccagtgtctgtgaggttggggaatggg 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 264 gagtcacaggcagtgttctcaatatggtttctgccagtgtctgtgaggttgtggaatggg 205

               
Query: 241 tagg 244
           ||||
Sbjct: 204 tagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)