BAC Information

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BAC

Clone NameMSMg01-086P21
Chromosome8 (Build37)
Map Location 29,805,670 - 29,806,065
singlet/doubletsinglet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-086P21.T7 (MSMg01no086_p21.b1)MSMg01-086P21.TJ (MSMg01no086_p21.g1)
ACCAG306150AG306151
length699698
length of high quality
(start - end)
43 (420 - 462)392 (134 - 525)
definitionCHROMAT_FILE: MSMg01no086_p21.b1 PHD_FILE: MSMg01no086_p21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:56 2005CHROMAT_FILE: MSMg01no086_p21.g1 PHD_FILE: MSMg01no086_p21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:38:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAATCCGCGGAA
TTCCTTATCATTTCCAACCACATAATATACAGAACATAACACGGTATGCA
TGAGCCCAATAGGACCCTGCTCTGAATCAAGTTATTTTTCTGCATCAATG
ACTAGCAGGCACATTATAACAACAATATGAATTACCTGGACAGTATGGAA
CAAACTGGCTACAGCTATGCTGGGGAAGAGGGGCAGGCCTCAACATAATA
GTTATGAGTTCATAGAGGACAAATATTCCAATAAAGTAAGATATGTGAGT
GTCTGACGTCGAATATTCTAATATACTGAGCTCCATGAGGCGTTTTGTTT
CTCAATGCATGTACAAGTTACGACCACACCATGATAATGCCACAGTCTGT
ACTGTATACAATAGCATTCTGTCCAAAAATACATTCCTAATTTCAAAAGT
GGTTTAAGTTGCGAGTGCTGTCGCATACCTTTAATCTCAGCACTTGGGAG
GCAGAGCCAGACAGATTTCTGAGTTTGAGGACAGCCAGGGCTACATAGAG
AAACCCTGTCTCACAAAACAAATACAAACAATCAAAACAAACCACCACTC
CCAAAAACCAACTAACACCAGAGTGATTTGTTGCTAAAATGCGAATATTC
ATCTGAATTTTTAGGACAGACCTCCTGATTGACTGGCTTGAGGCCAGTC
CAATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTATGTCCAACTGAAGTCAGTTTGCAT
CAAACCGGTGAACTATATTATTGGAACCCAGTAGTCCTCATGTGCTAGTC
CTGGGGTCTTGCCTCCTAGGAGGTACTTCAGGCAAAAGAAGTCAAAGAAA
ACCATGTGTCTCTTGGAGAAAATACACAGCAGCTGCGGTGGATTATGTGT
GCCGAGCACAGCTGTATCTTGAGACCCGTCCATTTCCTTTGAGAACGTAT
CCTGCTATGTACTGGGTCCTGGCTCTGGGACAGGAGAATGTTTTGGGCAA
TAAAGTTCATAGAGGGGTCACGTTGTAGTCTTCTCCCCCTTGTGTTCTGT
TTCCCCTTGTTTTTTTTCCCCCTACCACTTCATTTCTTGGCTTTTCCTCA
CAATCTTCTCCATCCAGATGGTGTTAGATTTATGCTCCACCAAACCAGTC
ACACATGCCTAAGTTCTTATCAGAGAGGCTGAAATATTCTAGTGCTTCTT
ATCCAAATCATTTACTTAACGGTCCCCTGTGAATGATTGCGGCAAAACGA
AAAAGGATAAAGTGTTGGAGTGAACATAAACCTCAACTTTAAGGGTATTT
TAAAAGGTTCTTCAGATATAGATCTGGGGGCGGGCCTTTTATAATAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no086_p21.g1 MSMg01no086_p21.g1 CHROMAT_FILE:
MSMg01no086_p21.g1 PHD_FILE: MSMg01no086_p21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:56 2005
         (392 letters)



>mm_chr8_29805468_29806265
          Length = 798

 Score =  681 bits (352), Expect = 0.0
 Identities = 383/396 (96%), Gaps = 6/396 (1%)
 Strand = Plus / Minus

                                                                       
Query: 3   cctcatgtgctagtcctggggtcttgcctcctaggaggtacttcaggcaaaagaagtcaa 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cctcatgtgctagtcctggggtcttgcctcctaggaggtacttcaggcaaaagaagtcaa 539

                                                                       
Query: 63  agaaaaccatgtgtctcttggagaaaatacacagcagctgcggtggattatgtgtgccga 122
           |||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||
Sbjct: 538 agaaaaccatgtttctcttggagaaaatacacagcagctgcagtggattctgtgtgccga 479

                                                                       
Query: 123 gcacagctgtatcttgagacccgtccatttcc----tttgagaacgtatcctgctatgta 178
           ||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||
Sbjct: 478 gcacagctgtatcttgagacccgtccatttcctttgtttgagaacgtatcctgctatgta 419

                                                                       
Query: 179 ctgggtcctggctctgggacaggagaatgttttgggcaataaagttcatagaggggtcac 238
           |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctgggtcctggcactgggacgggagaatgttttgggcaataaagttcatagaggggtcac 359

                                                                       
Query: 239 gttgtagtcttctcccccttgtgttctgtttccccttg--ttttttttccccctaccact 296
           ||||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||
Sbjct: 358 gttgtagtcttctcccccttgtgttctgtttccccttgtttttttttttcccctaccact 299

                                                                       
Query: 297 tcatttcttggcttttcctcacaatcttctccatccagatggtgttagatttatgctcca 356
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcatttctcggcttttcctcacaatcttctccatccagatggtgttagatttatgctcca 239

                                               
Query: 357 ccaaaccagtcacacatgcctaagttcttatcagag 392
           ||||||||||||||||||||||||||||||||||||
Sbjct: 238 ccaaaccagtcacacatgcctaagttcttatcagag 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 798
Length adjustment: 9
Effective length of query: 383
Effective length of database: 789
Effective search space:   302187
Effective search space used:   302187
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)