XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTG
CCTTGTATCCTCTAATAGGATATAAAGTAAGCCAGGCACTATAAGTATAC
AAGTTCAATCCCAGCCCTTGGGAGGCAGAGGCAGGTGGATCTCTGTGAGT
TTGGGGCCACCCTGGTATACAGAATGAGTTTGAAGTGAATTTAGTAATTA
CTCATGTTCAAAATAAATAATGTATTTGTAATAGTTTTGTTTAAACTAAT
AACCTATTACAAATTTCAGAAAGTACCATGAAAAGAAAAATATAGTATGG
AAATACAACAGCACAGTGAAATACATTAAAGGAATTTGAATGAACAATAC
ATTATAATTATAACTGTCCTTTAACATTTTCAGTTAAAAATCCATAATAA
TGTCACAATGAACCTCCTTATAGCACTAACTATAACTATTATTAAATTAT
CTATTTGGTATCATGAAATATTTTAAGTAGTTTATTATATAAATTACTCT
GTTGAATAGAATTTAATAACAAAAAGGCTGAACAACTGTGTGCTGGTAGA
ATATTCAGCTAACACTAGTTCTTGACAAGATGATACAGAGTAAGCTAATA
CTCTGCTTGAAAAAATAGAAATATTACTGTTGTCATTTGCTTGATGATAA
ATGATCTCAAGCTTGTCAATAATTTATGAATAAACAACACATTCTAGAAT
CCTTCAGAAATGATATGAT

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXATAATGAACTGTTGGCCATTTTCTACATATTT
TTAAAATGCAAAACAAAATTCCAAGATGAATTGGTATAAATTCCTCTCAA
ATTACTTTGTAGAAATCAATGATGAGTCAGTAAAAATGGCATAGTAAAGA
AACAGTAAAAATACACAAAAAATAAAAAGGGCATTTCTTTTTAACCATGT
GTGATGATTACTGTGAATCACATGCTCCACATATTTGTTCTATCACCTGA
CCAATATCTCAGTGAGGGATTGTCTGGAAAAGGAGGGCTCATGGGCAAAT
GTGAGCACATGTAGACTTGTGCGCACATATGGAAGTGATGCTTCTCATGA
TTTATTTAAAATAAGTTTTAAATTGAAATCATGTTCCATTGTTTTCCTCC
TCCAGCTTATCTCATGTACCATATCTCCAGGCCCTTACATATCCCTTTCC
CACTATTCAGCTGAAAGCCTTTCTCTTTGACTCTTATTGCCTTATGCAGA
TATATAGGATGCGAAGTTTTATATAAAGTTAATAATTTTCAAAAGATATT
TCTACCGGCAAAGAACAATTCTATCTGGTAAGTATGACATGCGACATGCT
GTCATTCTTTTAATATTTAGTATTGTCTAAATATACAAAGCAATTTTCTA
TTTAATAGTGTTGTTAAATTCT

Query= MSMg01no087_d23.b1 MSMg01no087_d23.b1 CHROMAT_FILE:
MSMg01no087_d23.b1 PHD_FILE: MSMg01no087_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:17 2005
         (682 letters)



>mm_chr8_38988698_38989779
          Length = 1082

 Score = 1294 bits (669), Expect = 0.0
 Identities = 675/677 (99%)
 Strand = Plus / Minus

                                                                        
Query: 5    gaattcttgccttgtatcctctaataggatataaagtaagccaggcactataagtataca 64
            |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 gaattcttgccttggattctctaataggatataaagtaagccaggcactataagtataca 961

                                                                        
Query: 65   agttcaatcccagcccttgggaggcagaggcaggtggatctctgtgagtttggggccacc 124
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 960  agttcaatcccagcccttgggaggcagaggcaggtggatctctgtgagtttggggccacc 901

                                                                        
Query: 125  ctggtatacagaatgagtttgaagtgaatttagtaattactcatgttcaaaataaataat 184
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900  ctggtatacagaatgagtttgaagtgaatttagtaattactcatgttcaaaataaataat 841

                                                                        
Query: 185  gtatttgtaatagttttgtttaaactaataacctattacaaatttcagaaagtaccatga 244
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840  gtatttgtaatagttttgtttaaactaataacctattacaaatttcagaaagtaccatga 781

                                                                        
Query: 245  aaagaaaaatatagtatggaaatacaacagcacagtgaaatacattaaaggaatttgaat 304
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780  aaagaaaaatatagtatggaaatacaacagcacagtgaaatacattaaaggaatttgaat 721

                                                                        
Query: 305  gaacaatacattataattataactgtcctttaacattttcagttaaaaatccataataat 364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720  gaacaatacattataattataactgtcctttaacattttcagttaaaaatccataataat 661

                                                                        
Query: 365  gtcacaatgaacctccttatagcactaactataactattattaaattatctatttggtat 424
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660  gtcacaatgaacctccttatagcactaactataactattattaaattatctatttggtat 601

                                                                        
Query: 425  catgaaatattttaagtagtttattatataaattactctgttgaatagaatttaataaca 484
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600  catgaaatattttaagtagtttattatataaattactctgttgaatagaatttaataaca 541

                                                                        
Query: 485  aaaaggctgaacaactgtgtgctggtagaatattcagctaacactagttcttgacaagat 544
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540  aaaaggctgaacaactgtgtgctggtagaatattcagctaacactagttcttgacaagat 481

                                                                        
Query: 545  gatacagagtaagctaatactctgcttgaaaaaatagaaatattactgttgtcatttgct 604
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480  gatacagagtaagctaatactctgcttgaaaaaatagaaatattactgttgtcatttgct 421

                                                                        
Query: 605  tgatgataaatgatctcaagcttgtcaataatttatgaataaacaacacattctagaatc 664
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420  tgatgataaatgatctcaagcttgtcaataatttatgaataaacaacacattctagaatc 361

                             
Query: 665  cttcagaaatgatatga 681
            |||||||||||||||||
Sbjct: 360  cttcagaaatgatatga 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1082
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1072
Effective search space:   720384
Effective search space used:   720384
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no087_d23.g1 MSMg01no087_d23.g1 CHROMAT_FILE:
MSMg01no087_d23.g1 PHD_FILE: MSMg01no087_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:17 2005
         (296 letters)



>mm_chr8_38953657_38954352
          Length = 696

 Score =  572 bits (296), Expect = e-168
 Identities = 296/296 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataatgaactgttggccattttctacatatttttaaaatgcaaaacaaaattccaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ataatgaactgttggccattttctacatatttttaaaatgcaaaacaaaattccaagatg 260

                                                                       
Query: 61  aattggtataaattcctctcaaattactttgtagaaatcaatgatgagtcagtaaaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattggtataaattcctctcaaattactttgtagaaatcaatgatgagtcagtaaaaatg 320

                                                                       
Query: 121 gcatagtaaagaaacagtaaaaatacacaaaaaataaaaagggcatttctttttaaccat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatagtaaagaaacagtaaaaatacacaaaaaataaaaagggcatttctttttaaccat 380

                                                                       
Query: 181 gtgtgatgattactgtgaatcacatgctccacatatttgttctatcacctgaccaatatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgtgatgattactgtgaatcacatgctccacatatttgttctatcacctgaccaatatc 440

                                                                   
Query: 241 tcagtgagggattgtctggaaaaggagggctcatgggcaaatgtgagcacatgtag 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcagtgagggattgtctggaaaaggagggctcatgggcaaatgtgagcacatgtag 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)