BAC Information

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BAC

Clone NameMSMg01-087F11
Chromosome8 (Build37)
Map Location 34,317,106 - 34,317,480
singlet/doubletsinglet
Overlap genenone
Upstream geneEG546052, LOC100042715, LOC628408, EG628412
Downstream geneWrn, Purg, LOC666630, Hmgb1-rs17, Tex15, Ppp2cb, Ubxd6, Gsr, Gtf2e2, Rbpms, LOC100042769, Dctn6, LOC100042777, Mboat4, Leprotl1, LOC666694, Tmem66
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087F11.T7 (MSMg01no087_f11.b1)MSMg01-087F11.TJ (MSMg01no087_f11.g1)
ACCAG306399AG306400
length704708
length of high quality
(start - end)
313 (44 - 356)375 (75 - 449)
definitionCHROMAT_FILE: MSMg01no087_f11.b1 PHD_FILE: MSMg01no087_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:25 2005CHROMAT_FILE: MSMg01no087_f11.g1 PHD_FILE: MSMg01no087_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCATTGTTCCTTGACTGCTCGCTGGACTGAGCTGTTAGAATTCCATTG
GTTATTGATTGCTCGCTGGACTGAGCTGTTAGAATTCCATTGGTTATTGA
CTGCTCGCTGGACTGAGCTGTTAGAATTCCATTGGTTATTGACTGCTAGC
TGGACTGAGCTGTTAGAATTCCATTGGTTATTGACTGCTAGCTGGACTGA
GCTGTTATAATTCCATTGCTTATTGACTGCTCGCTGGACTGAGCTGGCTT
CTTGCACCAAAGCTTTTGCTTCCCACGTCTGTGCCGTTATCCCCGCTCCC
TCACTCCTAACCCATCTTTTGCGTGTTTCCTATGCTCTTCCTTTCTCCTT
TCTGTCAATCTCCTGTGCCATCCTACAACATACCCTATGAGCTTATTTTA
CTGCTGTCTCTTCATTGAGGCGTCTTCTCTCCTCCCCTCTCCTAAGCCTT
CGATCTGACTTTGGAGGTGTTCACTGTTCTACCCTGACATCCTTTACTTA
TACTGCTATCCCCACTTTATTGTCAGCCCTTATGATTCTCCACTGACCCC
CCACTACATATGTCTGACATTCCCTCGCCTTTCCTCTGTGTTTCTTGTTC
CCCCGTATCCCTTTCCCCTCGTTCGTCTTCCTATCACCTATTTTCCGCTC
AACT
NCAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTCTGGGATTCTCACAGGAAATTAGC
CCTTTCTCCACTAAGTTGCTTCTGTAAAAATATTTTGTCACAACCAGTAA
CTAACCCAGGGCAATCAAAAAAAAAAATACAGAGAAGGTGGGGGTATAAA
TACAATTTAAATACATTGTATGAAATTCTCAAAGAATGGAAACATTTTTC
TTAAGAGAAGAAATACACAAAGAGCTAGAGAAATGGGTCAATGTAAGAGC
TAGCAGGTGATGTTCTTGCAAAAAGTCTGGGTTCGGTTACCAGCACTCAC
ATGTGAGCTCACAACTGTCTGCAATTCCAGTTTTAGGGGATCCAATTCTT
TCTTCTAACCTCTGTGAGCACTAGAAATGTACATGGTGCACATGCATACA
TGCAGACAAAAAACTTACACACATAAACCAAAAATAAAATCTTTTTAGAA
TACACAAATATGTTATCTACAAGTACGGCAGCATATAGTAGGGAAAACGG
TTAAAAGCCAAAAATAGAAGCTAAAAGGAAATGGTCTTATCAAATGTTTT
CATTGCATTCCCTCTTTTACTATTTTAATTTGGCAATTATGATAGAGCAC
TCAAAATGATAAGCATTGCAATAGTGCCTCCTAATTATTAATGCTTTGTG
ACGTAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_f11.g1 MSMg01no087_f11.g1 CHROMAT_FILE:
MSMg01no087_f11.g1 PHD_FILE: MSMg01no087_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:26 2005
         (375 letters)



>mm_chr8_34316906_34317680
          Length = 775

 Score =  725 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctctgggattctcacaggaaattagccctttctccactaagttgcttctgtaaaaatatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctctgggattctcacaggaaattagccctttctccactaagttgcttctgtaaaaatatt 260

                                                                       
Query: 61  ttgtcacaaccagtaactaacccagggcaatcaaaaaaaaaaatacagagaaggtggggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgtcacaaccagtaactaacccagggcaatcaaaaaaaaaaatacagagaaggtggggg 320

                                                                       
Query: 121 tataaatacaatttaaatacattgtatgaaattctcaaagaatggaaacatttttcttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataaatacaatttaaatacattgtatgaaattctcaaagaatggaaacatttttcttaa 380

                                                                       
Query: 181 gagaagaaatacacaaagagctagagaaatgggtcaatgtaagagctagcaggtgatgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagaagaaatacacaaagagctagagaaatgggtcaatgtaagagctagcaggtgatgtt 440

                                                                       
Query: 241 cttgcaaaaagtctgggttcggttaccagcactcacatgtgagctcacaactgtctgcaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cttgcaaaaagtctgggttcggttaccagcactcacatgtgagctcacaactgtctgcaa 500

                                                                       
Query: 301 ttccagttttaggggatccaattctttcttctaacctctgtgagcactagaaatgtacat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttccagttttaggggatccaattctttcttctaacctctgtgagcactagaaatgtacat 560

                          
Query: 361 ggtgcacatgcatac 375
           |||||||||||||||
Sbjct: 561 ggtgcacatgcatac 575


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 775
Length adjustment: 9
Effective length of query: 366
Effective length of database: 766
Effective search space:   280356
Effective search space used:   280356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)