BAC Information

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BAC

Clone NameMSMg01-087H21
Chromosome8 (Build37)
Map Location 15,501,824 - 15,501,953
singlet/doubletsinglet
Overlap genenone
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneEG665619, LOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087H21.T7 (MSMg01no087_h21.b1)MSMg01-087H21.TJ (MSMg01no087_h21.g1)
ACCAG306507AG306508
length712719
length of high quality
(start - end)
132 (66 - 197)250 (71 - 320)
definitionCHROMAT_FILE: MSMg01no087_h21.b1 PHD_FILE: MSMg01no087_h21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:38 2005CHROMAT_FILE: MSMg01no087_h21.g1 PHD_FILE: MSMg01no087_h21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATTTGCGGCGCTAATCGACTCCTATATTCAGAGATCCGCGGAATTCCAGG
GATTTCCCTGATGAATATGACAACTAGAAACAAGAGTCCCATACAGTATT
CTGTGAGATAGTTGCACTCAATGAAAGGCACTGTGCCTTGTATCAGAAGG
AATCCATTCATGTGCATCCTGAGCTACCGTCCCACTGGCATCCTACAGCA
CACTGTGTGAGATAAAGACCTTGTCTGTTGTGAAGTTGTTGCTTACCCAT
CAGTTCCTTGGCTTACTCATCATCCTTTTGGTCTCACAGTAGTGCTTCCT
TGTACTCTCTGATTCTGCCAAGTGTGCTGGGTCCATCTTGAAACTGCCCT
GTCTATCTCCTCTTTCCCCCCCCCTCAACCAATGGTTGCTGCTATCCAAG
GCCAGCATCCCTTCAGATCTTCCCTTCTTACTTCCTGCGTCCATGCCTTC
AATATTCTGCCCATTTCCAATAACTCCTATGATATTGTTCGACCATCTCA
CAGTGCCTACACCTCTGCCATTGTTTTTCCCGCTGATCCACACATATCCC
CCTCCTCGCAAACATTCTCACCTTTTCTTGTACACCCACATTGTCATTCT
AGTGGCCTGTTCTGTATTTCTTATTAGAACCCTCCAATTTTCCCGTACCT
ACTTTTCCCCTCCATTCCCCCTTCCACCTTCCCACTTCCTCATACCCCTT
TCCCACACCTCC
TGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTAAGCAATGTGCTTGTGGTGGTTTGAATAT
GCCTGACCTATGGCTGTTACGAATTATGGTTGTGCTGGAAGAAGAGTATC
ACTGTGAGTGTGGGCTTTGAGGTGTCCTAGACTCATGCTTTGCCCAGTGA
AGACAAGAGCCTCCCTCTGGCTCTCTTTAGATCAAGATGTAGAACTCTCA
GCTTCTCCAGTATCATGCCTTCTCTCTCACTGCCATGTCTTGCCATGGTG
ATAATGGACCACACCTCTGAATCTGTAAGCCAGACCCAATTCATTGTTTG
CCTTTATAATTTTTTCCGCGCCGCCCCTGTCTCTTCACAGCGATGGAACC
CCAAACTCAGACAGTGCTCATTTGTTTTCATTGATAGATAAGTGGTTTGA
AATATGGCCCTTGCTTTCCACAGAACCCAACATAAAGCTTTAAATGCATG
ATTTATTCAGATCATGGGTCGAGGAGGATAATTCATACCATCTGTTGACT
TTACATATTGCAGGCAATATGGAATATTCTGGATCCCCTCCCGTTTTACA
TCTCGGGCCTTATAACATATTCGGTTTCCCAGCTAGCCTGCACAGGGTGC
CCACTTATCTGTCCCCGCACAATAGATTTCATTATTACTGCAATTTATCC
TACCGACTATTGAATTGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_h21.b1 MSMg01no087_h21.b1 CHROMAT_FILE:
MSMg01no087_h21.b1 PHD_FILE: MSMg01no087_h21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:38 2005
         (132 letters)



>mm_chr8_15501624_15502155
          Length = 532

 Score =  228 bits (118), Expect = 8e-65
 Identities = 127/130 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatgacaactagaaacaagagtcccatacagtattctgtgagatagttgcactcaatgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 330 tatgacaactagaaacaagagtcccatacagtattctgtgagatagttggactcaatgaa 271

                                                                       
Query: 61  aggcactgtgccttgtatcagaaggaatccattcatgtgcatcctgagctaccgtcccac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 270 aggcactgtgccttgtatcagaaggaatccattcatgtgcatcctgagctaccatcccac 211

                     
Query: 121 tggcatccta 130
           || |||||||
Sbjct: 210 tgacatccta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 132
Length of database: 532
Length adjustment: 8
Effective length of query: 124
Effective length of database: 524
Effective search space:    64976
Effective search space used:    64976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)