BAC Information

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BAC

Clone NameMSMg01-088D04
Chromosome8 (Build37)
Map Location 73,163,708 - 73,164,002
singlet/doubletsinglet
Overlap genenone
Upstream geneEG636741, 1200003I07Rik, D330038O06Rik, Atp13a1, Gmip, Edg4, Pbx4, Cilp2, BC028663, Ndufa13, Tssk6, Gatad2a, LOC665649, 9130404D08Rik, Sf4, Tm6sf2, Hapln4, Ncan, Rfxank, 2310073E15Rik, 2310045N01Rik, Mef2b, Tmem161a, Slc25a42, Armc6, Sfrs14, Homer3, Ddx49, Cope, Lass1, Upf1, Comp, Crtc1, Klhl26, Tmem59l, Crlf1, 2810428I15Rik, Uba52, Fkbp8, Ell, Isyna1, Ssbp4, Lrrc25, Gdf15
Downstream genePgpep1, Lsm4, Jund1, 2410018E23Rik, LOC100041434, Pde4c, Rab3a, BC051227, Ifi30, Pik3r2, LOC100041971, Mast3, Il12rb1, Arrdc2, Kcnn1, LOC100042011, Ccdc124, Slc5a5, Rpl18a, Snora68, Mtap1s, LOC100042057, LOC665858, LOC384645, LOC100041583, EG621377, 2410004L22Rik, Myo9b, 2010315L10Rik, Ocel1, Nr2f6, Ushbp1, 5430437P03Rik, Ankrd41, Abhd8, Mrpl34, 1500034J01Rik, Tmem16h, Gtpbp3, Plvap, LOC665928, Bst2, 1110012M11Rik, BC033932, Txnl6, Slc27a1, Pgls, Bcnp1, Glt25d1, Unc13a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D04.T7 (MSMg01no088_d04.b1)MSMg01-088D04.TJ (MSMg01no088_d04.g1)
ACCAG307019AG307020
length7011,214
length of high quality
(start - end)		302 (43 - 344)---
definitionCHROMAT_FILE: MSMg01no088_d04.b1 PHD_FILE: MSMg01no088_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:35 2005CHROMAT_FILE: MSMg01no088_d04.g1 PHD_FILE: MSMg01no088_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGG
AATTCCTGATCCTCCTGCCTCAGCCTCGTGAGCCTGGCACCCCAGGCTAC
CAGACCTACACTGCCTCTGGGGGCTCTGTCCTGTCTCCACAGGATCTTTA
CAGTTTCTTCTCTCTCCTGGGTCTCCTTCTACTTCCTCTAGACAGCAGGT
CAGGCCACAGACTTCAGATCTTTTCTAATGCCTGTGTTGTGTCACCTGTA
ACACCTGTGTGTGTCATCTGCGACACCTATGACACTTGTATTTAGTAGCT
TACATGTTTGTTGCTGCTCTTTTTGAAATAGGGTTTCTCTGTGTAGACCT
GACTGGCCTGAAGCTTCCTACATAGACCATGCTGGCCTCGAACTCACAGA
GTTCCTCCTGCCTCTACTCCCCAAGGACCGAGGCTAAAGGCATGCACCAC
CACAACTGGACTGACTTTGCCCTCATTCATGGTTAAATTTTCTCTAACCC
ACTTTGTGAATTCTCTGCACCCTTGTTCCTTTTGCTTGTGTCCATTCGCC
ATTGTGTAATGTTGTAGACTCTCCCCTTTTCCCGACTCTATTCTCATGTA
CGCCCCACTCGTTTTTGAATCCTTTTTGACTCCCTTTTTTCCCTCGACTT
CCTTACCCCCCTTTTACTACCCTGTATCGTCCCTGTCCCTGTCCCTGCCT
C

ACGAGGGGTGCTTNNNAGAGAGGGGAAAAGGGTTATACCTCCTAGCGAGC
CACCCCTCCTTTTTCTCTTCNTCCGCAAAAGATATTGGGGAAAGGCCTGG
TGGGGGCGCCCCGGGGTTTTCCCAAAAATAGGAGGGGAATTATTTGGAAA
GGTTTTGTCCCGGAAAACCTTTTCCAAAAACCTCAATGGGCGCGGGGGTC
CCCCCCACAATTGTGGGGGGTAACGGACCTGTGGGAATTATATTGGGGGG
GTGACCGCCGGGCGTTTTTCGGGTTTGGGTGGTATTGGCGCCTTTTTCAA
CCCCGTTTTTTTTTTTTCTCCAGCTCTTTGCGCGCCCCCCCCGTACTTAT
CCCCCGTTTTGTCCCCCCAGTCATTTGTGTATCTTTTTATCCGGACTCAG
ACGGCTTTAATTTATCCGCCCTTTATCTTTGCCCGCGCTTTTTATAGGGG
AGTGGCGGGTTTTTTCCCCCCCGCCATCAAACCCAATACTAATTCTTGGT
ACGTACCAAGTTTACCTTCCTCAGCGTCCGTCTTTTTGGCGGTTTTCGCC
TCATTCGGTTTTATACTTAATATTCGCATTCGGGCTTCGGGCTTTGTTTA
TGATCGCGAAATCGTTTGTGTCCACCCGACACGCGGTCGTTTGTAGAAAA
TATTAGGCCGCGTAGAACGCATCGCGCGTGTATTTTATTCATAAGAGCGA
TAGACGGTGGACGGCGGAACGCGTGTGATATCTTGTTAACGGGGGTCGGC
GGGGTTGTAGCTAAAATCTGTTAACACGTTTGTACTCTTCGAACCGGGGG
ACCGGGAGTGAGTGTTATTTGATATCTATCGAGTTCGGCCGGGCGATCTC
AATTGTCGGTTACGTATGGTGGTCGGGGTGTGTTACTTTGCTGGCATTTT
GTCGACAGCATAAACATGCGGGCAGCACACGTTTGTAGCCATTATTGTGT
CTGATTAATTCTGCGCACCGAAATACGTGCGTATATTGCAGGCGTATAGG
CGGTATAATTCGTTGCATTATCTGCTAATATTATATGCAAACTCCACCGC
GATTTGTATATAATTATAAGGGTGGTGCGGAGCCGGGTTATAACAAAATC
TGTAGGTGTGTGTGCCATAGTATATCGCTGGCTCCGCGCATTATATCACT
ATTATATATATCCGTCTTACAGCCGCCCCTTTTACTTCGCCGCGCTTATT
GCGCGGTTTATATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d04.b1 MSMg01no088_d04.b1 CHROMAT_FILE:
MSMg01no088_d04.b1 PHD_FILE: MSMg01no088_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:35 2005
         (302 letters)



>mm_chr8_73163501_73164202
          Length = 702

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcctgatcctcctgcctcagcctcgtgagcctggcaccccaggctaccagacctac 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaattcctgatcctcctgcctcagcctcgtgagcctggcaccccaggctaccagacctac 443

                                                                       
Query: 68  actgcctctgggggctctgtcctgtctccacaggatctttacagtttcttctctctcctg 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actgcctctgggggctctgtcctgtctccacaggatctttacagtttcttctctctcctg 383

                                                                       
Query: 128 ggtctccttctacttcctctagacagcaggtcaggccacagacttcagatcttttctaat 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ggtctccttctacttcctctagacagcaggtcaggccacagacttcagatcttttctaat 323

                                                                       
Query: 188 gcctgtgttgtgtcacctgtaacacctgtgtgtgtcatctgcgacacctatgacacttgt 247
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 322 gcctgtgttgtgtcacctgtaacacctgtgtgtgtcatctgtgacacctatgacacttgt 263

                                                                  
Query: 248 atttagtagcttacatgtttgttgctgctctttttgaaatagggtttctctgtgt 302
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttagtagcttacatgtttgttgctgctctttttgaaatagggtttctctgtgt 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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