BAC Information

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BAC

Clone NameMSMg01-088D18
Chromosome8 (Build37)
Map Location 36,637,102 - 36,637,494
singlet/doubletsinglet
Overlap genenone
Upstream geneDusp4, LOC675578, Tnks, LOC666792, LOC666797, LOC666804, Ppp1r3b, Thex1
Downstream geneMfhas1, LOC100041572, Gm501, Cldn23, LOC671641, D8Ertd82e, Lonrf1, EG544878, 6430573F11Rik, Dlc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D18.T7 (MSMg01no088_d18.b1)MSMg01-088D18.TJ (MSMg01no088_d18.g1)
ACCAG307047AG307048
length720729
length of high quality
(start - end)
457 (38 - 494)393 (76 - 468)
definitionCHROMAT_FILE: MSMg01no088_d18.b1 PHD_FILE: MSMg01no088_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:38 2005CHROMAT_FILE: MSMg01no088_d18.g1 PHD_FILE: MSMg01no088_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCC
ACTCCTGTCACCAATTTGTCTAAGACAGGGGTTTTTATTCCTGCACAAAC
ATCATGATCAAGAAACAAGTTGGGGAGGAAAGGGTTTATTCAGCTTACAC
TTCCTCATGCTGTTCATCACCAAAGGAAGTCAGGACTGGAATTCAAGCAG
GTCAGGAAGCAGGAGCTGATGCAGAGGCCATGGAGGGATGTTATTTACTG
TCTTGCTTCCCCTGGCTTGCTCAGCTTGCTTTCTTATAGAACCCAAGACT
ACCAGCCCAGGGATGGCATCACCCACAATGGGCCCTCCCATCCTTAATCA
CTAATTGAGAAAATGCCCCACAGCTGGATCTCATGGAGGCATTTTCCTCA
AGGGAGGCTACTTTCTCTATGATAACTTCCGCTTGTGTCAAGTTGACACA
AAACCAGCCAGTACACTTAACTCCCAGGATACCGGGGAGACAACACAAAG
GATGGGTAGCCAGGGGGTGGCTGCTCTGTCTTCATGGATATCTCCTCAGG
GGATTGGACCCTCCACTACAGGATCATGGACAGGTGAGTCAGATTTGTGC
AAACAACACAGGCTGCACCCTGATTTGCCTTTGAATATATAAACATGCCT
CAGTTGTTTAAATGACTATGTATAAGCCCGTTCATTGGACCATATATTTA
CGTCTGCACTCTGATGCTAG
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTGACATTGTTGAAATGTATTTAAA
AATCCCCAATTTTACGAGTCCTGGGCAATTAGCTTGGACAATCTGCACAT
GTTGGCGGAGGGTTGCACTAAGGCTAGGGAGGAAGCTTAGGTTGATGCTC
CAGGAAGAAAGCACTTTCCCTGTGGACACATGTGCTCTCCCGCATGGCAG
ACTGAAATATAGAAACGCACCTTTAAATGCAACAAGTGGCTTTAACGACA
GCTTCAATGATGTGTGTTTTGTTGCTCGTATTTCTCTAAAAGCTTTAAGC
TTTTATCTTGTTTTATGTGTATCTGCGTTTTGCTTGCATGCGTGTCTGTG
CACCACATTCTTGCAGTACCTGAAGCAAGCCTGAAGTAGGCACCTGGTAT
TTCCTGGAACTGGAGTTACAAATAGTTGTGAGCTGCCACGTGGGTGTTGG
TAATCGAACCTGGGTTCCCTGGAAAAGCAGCCAGCACTCACTCTTATCCA
CTGAGCCATCTCTCCACACTTATATGCATTCCTTTTAAGACAAAATTTAT
TCCACTGATATAGTGCCTAGTGTGCACCCTCGCTTTATGTGAGATGAACC
CCAAATATAACCTATTTTAGGTTTGACACTCGATCTGCGTATTTTTCGGG
CTCTTTCTTACGAGACCTTAACATATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d18.g1 MSMg01no088_d18.g1 CHROMAT_FILE:
MSMg01no088_d18.g1 PHD_FILE: MSMg01no088_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:38 2005
         (393 letters)



>mm_chr8_36636902_36637694
          Length = 793

 Score =  721 bits (373), Expect = 0.0
 Identities = 388/393 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgacattgttgaaatgtatttaaaaatccccaattttacgagtcctgggcaattagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgacattgttgaaatgtatttaaaaatccccaattttacgagtcctgggcaattagctt 260

                                                                       
Query: 61  ggacaatctgcacatgttggcggagggttgcactaaggctagggaggaagcttaggttga 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 ggacaatctgcacatgttggcggagggttgcactaaggccagggaggaagcttaggttga 320

                                                                       
Query: 121 tgctccaggaagaaagcactttccctgtggacacatgtgctctcccgcatggcagactga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgctccaggaagaaagcactttccctgtggacacatgtgctctcccgcatggcagactga 380

                                                                       
Query: 181 aatatagaaacgcacctttaaatgcaacaagtggctttaacgacagcttcaatgatgtgt 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 381 aatatagaaacgcacctttaaatgcaacaagtggttttaacgacagcttcaatgatgtgt 440

                                                                       
Query: 241 gttttgttgctcgtatttctctaaaagctttaagcttttatcttgttttatgtgtatctg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttttgttgcacgtatttctctaaaagctttaagcttttatcttgttttatgtgtatctg 500

                                                                       
Query: 301 cgttttgcttgcatgcgtgtctgtgcaccacattcttgcagtacctgaagcaagcctgaa 360
            ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 501 tgttttgcttgcatgcgtgtctgtgcaccacattcttgtagtacctgaagcaagcctgaa 560

                                            
Query: 361 gtaggcacctggtatttcctggaactggagtta 393
           |||||||||||||||||||||||||||||||||
Sbjct: 561 gtaggcacctggtatttcctggaactggagtta 593


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 393
Length of database: 793
Length adjustment: 9
Effective length of query: 384
Effective length of database: 784
Effective search space:   301056
Effective search space used:   301056
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)