Query= MSMg01no088_d19.b1 MSMg01no088_d19.b1 CHROMAT_FILE:
MSMg01no088_d19.b1 PHD_FILE: MSMg01no088_d19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:38 2005
(260 letters)
>mm_chr8_33317301_33317960
Length = 660
Score = 476 bits (246), Expect = e-139
Identities = 252/254 (99%)
Strand = Plus / Minus
Query: 7 gaattctcaccataccgtaatcttccataggccctccccagagttaagttgttggtggtc 66
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 gaattctcaccatactgtaatcttccataggccctccccagagttaagttgttggtggtc 401
Query: 67 atattcttgatcctctagaactgttagctaaaggtgtatccctttttattttcttacaaa 126
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 atattcttgatcttctagaactgttagctaaaggtgtatccctttttattttcttacaaa 341
Query: 127 tacctcaacttcagttatgttgtaatagcaagacaaaaataagttgatactaatagtatc 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 tacctcaacttcagttatgttgtaatagcaagacaaaaataagttgatactaatagtatc 281
Query: 187 tttaaaatggatttcaatactatatgacatgtttttattacaattatttacttggggtgg 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tttaaaatggatttcaatactatatgacatgtttttattacaattatttacttggggtgg 221
Query: 247 ggggttgcatgcca 260
||||||||||||||
Sbjct: 220 ggggttgcatgcca 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 260
Length of database: 660
Length adjustment: 9
Effective length of query: 251
Effective length of database: 651
Effective search space: 163401
Effective search space used: 163401
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no088_d19.g1 MSMg01no088_d19.g1 CHROMAT_FILE:
MSMg01no088_d19.g1 PHD_FILE: MSMg01no088_d19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:38 2005
(426 letters)
>mm_chr8_33159803_33160629
Length = 827
Score = 818 bits (423), Expect = 0.0
Identities = 426/427 (99%), Gaps = 1/427 (0%)
Strand = Plus / Plus
Query: 1 ttttgaa-aacatctaaaatgttccagggccttctatgctgggttaataagatgaaaacc 59
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgaacaacatctaaaatgttccagggccttctatgctgggttaataagatgaaaacc 260
Query: 60 agtcaggtagataatgaaaccatttcttttccaacatctactgcctccttaatcactggt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtcaggtagataatgaaaccatttcttttccaacatctactgcctccttaatcactggt 320
Query: 120 tagagaaagagataataatagaaacctgccatgaaaatgtatatcagagtggagacattt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagagaaagagataataatagaaacctgccatgaaaatgtatatcagagtggagacattt 380
Query: 180 gattgaaagctcaggatttttatagaaaactaaacacattcagcaaaaagttctgtcctt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgaaagctcaggatttttatagaaaactaaacacattcagcaaaaagttctgtcctt 440
Query: 240 ttattatccattagtgcaatgtaactatcaggtttatgtcctagttgcttctgaagcacc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattatccattagtgcaatgtaactatcaggtttatgtcctagttgcttctgaagcacc 500
Query: 300 aaggggaagaatcattttaaatagttatgaacacattgcccatggcaagactactaggtg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggggaagaatcattttaaatagttatgaacacattgcccatggcaagactactaggtg 560
Query: 360 cagtaattatgtcccaaaataatccaccccatgttctactccaagaagacctatttgaca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtaattatgtcccaaaataatccaccccatgttctactccaagaagacctatttgaca 620
Query: 420 aaccaac 426
|||||||
Sbjct: 621 aaccaac 627
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 827
Length adjustment: 9
Effective length of query: 417
Effective length of database: 818
Effective search space: 341106
Effective search space used: 341106
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
