BAC Information

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BAC

Clone NameMSMg01-088F12
Chromosome8 (Build37)
Map Location 101,343,599 - 101,344,016
singlet/doubletsinglet
Overlap genenone
Upstream geneEG384885, LOC100041173, EG636915
Downstream geneCdh8, A330008L17Rik, LOC667531
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088F12.T7 (MSMg01no088_f12.b1)MSMg01-088F12.TJ (MSMg01no088_f12.g1)
ACCAG307128AG307129
length689732
length of high quality
(start - end)
419 (71 - 489)272 (58 - 329)
definitionCHROMAT_FILE: MSMg01no088_f12.b1 PHD_FILE: MSMg01no088_f12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:47 2005CHROMAT_FILE: MSMg01no088_f12.g1 PHD_FILE: MSMg01no088_f12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGTGCACCCCAGTGAATATAATTCAGTGTCATCTTCTCTTTA
TTCAAGATACACATTGTATTAAATATATTTTATTGGACATCTACATTATC
AAAATTAAAGGATAAAATTGAATGACCTTTTCTATTGTTCATGACCCCTC
TGCCATCACCTCATCTCAATTTTGTTAAAGGTCATTACAATTTGTACTAT
GGCATTAGTTAAAAAAAACTGCATTAGAATTTGCTTTGCATGACAAGAAA
TTATCTACAAATCAAAATATATAAATATTATAAAAACAGAGTTTAAAATG
ATTTGAATCAACCTAAGTGGGTTGGTAGATCTTTGCATAGGCTTATAGCT
TTCTGGTAACTTCAAAAATATTGGCATTATGATGCATATGCTATGTTCTT
TGATTCACAAACTGTTCTATCATGTGGTTTTCTTTGCTACGCCTATAGAG
GGCATAACTAGACTAAAGCTCGGTTGCCTGGATTTGAGTGTCCCTTCTAA
CATTGATTTTCAGACTTCAAACTCCCTCTTGGCCCTCCTTTGGATTAAGT
TCCTTATCTATAAATGGGAATAAAGCCTCCTTCCTAATCCTTGTTACTGC
GTTGCTGATCAAATCATTTCTATTACTGTTCAAATCGTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCTGATCTATCAATACTTTTGACATGAAGGGGTGTCTAAAAACT
TATCATCCTGAATGAGGTAACTCAGACCGAAAAGGTATGTACTCACTAAT
AAGTGAATATTAGCCAAAAAAAAAAATACAGAATAATCAAGATACAGTTC
ACAGAACTCAATAAGATCACGAAGCTGAAGTGCCCAAGTGAGGATACCTC
AGCGGCACTTGGGAGAGAGAAGAAAGCAAACACAAATGGGGAGGGAGGGA
GGGACCTGGGAGGGAAAGTGGATGGGGTGGTGGCACCTTTTTTCCACCCC
CTTCCTATTATCCCTTACCTCCCCTATTTTTCTCTTCTTTTTTACTGATC
TCTCTCATTATTCTTCCCCGTTTACTATTTTTCTTTTTTAACTACATTCA
CTTTTTTTTTTTTTTTTCCTCTGCCCTACAATATCTAAATTGTTTGCTAT
TTTTTTTCTTCTTCTCCCAATCAATCCGCGCCCATCATTTATTTTTCTTT
ATCCTCCTCTAATCTTCTTTTTCTCTTTCGCCTCTATCTTCTCTTTCTAT
ATTTCACCCCCCCCTTTTTTTTCTTCTTTGTCTGTCGTTTCTCTTAATTC
TTTCTTTCCTATATTCGCCTCCCCCTTAATCTATTTTTTTTTCCTCTACT
CCCACTTTTATTGCCCTCTTCTTCATTGTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_f12.b1 MSMg01no088_f12.b1 CHROMAT_FILE:
MSMg01no088_f12.b1 PHD_FILE: MSMg01no088_f12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:47 2005
         (419 letters)



>mm_chr8_101343573_101344392
          Length = 820

 Score =  785 bits (406), Expect = 0.0
 Identities = 415/418 (99%), Gaps = 1/418 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaatataattcagtgtcatcttctctttattcaagatacacattgtattaaatatattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgaatataattcagtgtcatcttctctttattcaagatacacattgtattaaatatattt 385

                                                                       
Query: 61  tattggacatctacattatcaaaattaaaggataaaattgaatgaccttttctattgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tattggacatctacattatcaaaattaaaggataaaattgaatgaccttttctattgttc 325

                                                                       
Query: 121 atgacccctctgccatcacctcatctcaattttgttaaaggtcattacaatttgtactat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atgacccctctgccatcacctcatctcaattttgttaaaggtcattacaatttgtactat 265

                                                                       
Query: 181 ggcattagtt-aaaaaaaactgcattagaatttgctttgcatgacaagaaattatctaca 239
           || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gggattagttaaaaaaaaactgcattagaatttgctttgcatgacaagaaattatctaca 205

                                                                       
Query: 240 aatcaaaatatataaatattataaaaacagagtttaaaatgatttgaatcaacctaagtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 aatcaaaatatataaatattataaaaacagagtttaaaatgatttgaatcaacctaagtg 145

                                                                       
Query: 300 ggttggtagatctttgcataggcttatagctttctggtaacttcaaaaatattggcatta 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 144 ggttggtagatctttgcataggcttatagctttctggtaacttcaaaaatattggtatta 85

                                                                     
Query: 360 tgatgcatatgctatgttctttgattcacaaactgttctatcatgtggttttctttgc 417
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tgatgcatatgctatgttctttgattcacaaactgttctatcatgtggttttctttgc 27


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 419
Length of database: 820
Length adjustment: 9
Effective length of query: 410
Effective length of database: 811
Effective search space:   332510
Effective search space used:   332510
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)