BAC Information

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BAC

Clone NameMSMg01-088K19
Chromosome8 (Build37)
Map Location 107,286,810 - 107,287,072
singlet/doubletsinglet
Overlap geneLOC628050
Upstream geneLOC100041397, LOC667656, Cdh5, Bean, Tk2, Cklf, Cmtm2a, Cmtm2b, Cmtm3, Cmtm4, Dync1li2, Ccdc79, Appbp1, Car7, LOC628007, 4833426J09Rik, Cdh16, Rrad, 1110019N10Rik, EG637550, LOC382052, LOC100041473, Ces6
Downstream gene4932416K20Rik, BC015286, Matr3-ps2, Ces2, LOC667754, LOC667760, Ces5, 2310038E17Rik, 2210023G05Rik, LOC436058, EG436059, Es31, EG13909, LOC667774, BC026374, LOC100042408, Cbfb, D230025D16Rik, C76566, Tradd, Fbxl8, Hsf4, Nol3, 4931428F04Rik, Exoc3l, E2f4, Elmo3, Lrrc29, Hspc171, Fhod1, Slc9a5, Plekhg4, Kctd19, Lrrc36, 2700055K07Rik, Zdhhc1, LOC667837, Hsd11b2, Atp6v0d1, Agrp, EG667846, 2310066E14Rik, LOC546100, Ctcf, EG546101, D130029J02Rik, Acd, Pard6a, E130303B06Rik, 4933405L10Rik, Gfod2
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088K19.T7 (MSMg01no088_k19.b1)MSMg01-088K19.TJ (MSMg01no088_k19.g1)
ACCAG307369AG307370
length688762
length of high quality
(start - end)
234 (119 - 352)284 (129 - 412)
definitionCHROMAT_FILE: MSMg01no088_k19.b1 PHD_FILE: MSMg01no088_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:14 2005CHROMAT_FILE: MSMg01no088_k19.g1 PHD_FILE: MSMg01no088_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:14 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
CTGCCCCTGCGTGCTGTTAGATCCTCTATCACAGGCTAGACTGGGAAGGG
TGCAGATTCTTTTTGCCCATAAATTTTTGGGCCATGATATTTGATTTTGT
CCTCTCCCAGAATCCTAGATTTTCTCAAATGAACTGAGACCTCAGCAGTT
ACCCAGAAAATCATCTGGGACCTCATTCAGTTAAAAAAAAATAATAATAA
TAATAAAGTAGTAATAAAGACTCACGTTTCATCCCAAAAAGCATGGACCC
AAAGACAAAAGGAACCTCATCTCCGTGGTCAGCATTCACGTGGAGTGGCC
TGACTTCCTTGACGAAGCTGCATTGATGTTGGAATTCATAGAAGTAGACA
GGGGCATGCCACCCTGGAGGAGGGACAAAGTGACTCAGTGGCCCCTCACC
TAAATTTTTTTTTCTGATTCATATGTGGTGATTAAAAAGTTACCAGGAAT
CACTAAAGTTAGATGGGAGAGGGAGCCCCAAGCACGAGTACTAGACATGT
AAAAGCCCTTGGTTAATCAGTGCCCCTGGTCTTCCCAGCTCGTTGGCTTT
GTTAAGTCAACAGAGTCTCAGCAATCCCTTTTTCTTTCCTGTACCCTGAA
TTCACTCCTCTTAATCTATACCTGAGGAGTCTTAACCT
TTTTTTTTTTCNTTTTTNNCTTTTTTTTTTTTCTCCNTTNNTTTAATTCC
CNCNTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATACAGTTCCTTTCAGTTTGTG
GAATTCACAGGCAGTTTTTCTTTGCCGAGCAATCCAGTGAGAAGCCAAGA
GAAGCAAGTTTTAACCAATCAGCTTGGGCAGGAGTTTTGAGCCAGAACAG
CTGAATTGAACCAGCCAGCCGGAGTTCAGAAAGAACTAGATAGGGTAAGT
TTATTCAGCAGTAAGCCTCTGAGATGGCAGTCACAGCTGGCAAATAAGTT
ACTTTACAAGCGAAGTAAAGATCAACATACCCTTATTATCCAAATTAGAT
AAAGGTGGAGAGAGTATACCCAAACTACCACCAATTAGAAATGAAAGAGG
AAACTTACCAACAGATGCTGCCCACCATCCAGAGAATTATTATAGACATA
CTATAGAAATCTATACTCTACCAAATTGGAAAAATCTAATAGAGGTGGAT
AATTTTCTCAATGCATACCACTTACTCGATAAATCAAGATCAGATAAGCA
CTTTAAACAAACACACACACTTCGCACACGTTTTCACACACGCACATACA
CACCTCACACACCCATTATATTATTCATGAGAGAAAGAGCGTAGGGAAGA
TAAGAGAAAATACCTTTTCTTTAATTTTCTAATTAACACTAGTACTGATT
CGATGCATTACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_k19.b1 MSMg01no088_k19.b1 CHROMAT_FILE:
MSMg01no088_k19.b1 PHD_FILE: MSMg01no088_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:14 2005
         (234 letters)



>mm_chr8_107286761_107287394
          Length = 634

 Score =  362 bits (187), Expect = e-104
 Identities = 231/263 (87%), Gaps = 29/263 (11%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataaatttttgggccatgatatttgattttgtcctctcccagaatcctagattttctcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ataaatttttgggccatgatatttgattttgtcctctcccagaatcctagattttctcaa 253

                                                                       
Query: 61  atgaactgagacctcagcagttacccagaaaatcatctgggacctcattcagttaaaa-a 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 252 atgaactgagacctcagcagttacccagaaaatcatctgggacctcattcagttaaaata 193

                                                                       
Query: 120 a-aa---------------------------ataataataataataaagtagtaataaag 151
           | ||                           |||||||||||||||||||||||||||||
Sbjct: 192 ataataataattaataataataataataataataataataataataaagtagtaataaag 133

                                                                       
Query: 152 actcacgtttcatcccaaaaagcatggacccaaagacaaaaggaacctcatctccgtggt 211
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 132 actcacgtttcatcccaaaaagcatggacccaaagacaaaaggaacctcatcttcgtggt 73

                                  
Query: 212 cagcattcacgtggagtggcctg 234
           |||| ||||||||| ||||||||
Sbjct: 72  cagcgttcacgtggggtggcctg 50


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)