BAC Information

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BAC

Clone NameMSMg01-088M15
Chromosome8 (Build37)
Map Location 117,553,904 - 117,554,135
singlet/doubletsinglet
Overlap geneWwox
Upstream geneNudt7, AI427515, Clec3a
Downstream geneMaf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088M15.T7 (MSMg01no088_m15.b1)MSMg01-088M15.TJ (MSMg01no088_m15.g1)
ACCAG307453AG307454
length686655
length of high quality
(start - end)
232 (122 - 353)227 (105 - 331)
definitionCHROMAT_FILE: MSMg01no088_m15.b1 PHD_FILE: MSMg01no088_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:23 2005CHROMAT_FILE: MSMg01no088_m15.g1 PHD_FILE: MSMg01no088_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGTAGAGCTTTCGTGCATAGCAAACACTAACAAATACAGAATCA
ACACCCGGGAAATAATGAACCCCCTAACTCTACAAAATGAACTCTCAATG
ATTTAGCTTTTAGTCATTGACATGATTTCTGAGAAAACCACCAAGGGCTG
CGAGCCTCCTCCTACCATCCCTTGTCCATCTAACCAGATGAAGTATGGTT
CCTGAGTGTTGAAGTGGGTCATTTGACTGGACCAGTGCCTTCAGGAAGAG
CCCATGTCAGGATGAGGCTGCCTGTCTTCATCAGCCCTTGCCAAGGCAGA
AACGTATTTCTGTACCACCCCCCCCACATAAACACTGGGGATTGGAGAGA
CCTTTATCTGGTGCCCCCTATAAAAAATAAGTAGCCTGGGCTGGTGTAAG
GAGGCAGCAGGCTGCCCTGCATAATAGGGAAGCAGGAGAGAACCTGAGCA
GGCCCAATTTAGCCTAATTACCAGATTTGTCTAAGGCTGACCCCGAAGCA
TAATGTGATCTCTAGATCAGCCTGCTCATCTCCTACCAGTACGGTAATGA
TTAGTTTGAATCACCCGTATCTTAACCCCACTAGAAGAGTTTCCCAATAC
TGACGGTAGTTTGTATTAGAATACCCCTTACCCTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTGACCCCCCTCACTGGCCCTGGAATGGGATATGCACTTTTTCACGTT
AGATGGTGGCTTGCCCTTCTTTCTCCTACAGATTAATTAATTAATGTATT
CATTGACTCCCTCATGCATTTATTCATTCTACAAATACTCTCTGAGCTGC
TCTCGAGCCCTTGGGTGGTGGTGGGTCCTGGGAATAGGAGAGTGAGCCAC
ACACTGTTCCTGCCCACACCTAATGAGGAGACAGGCCGTAATTAATTTGT
CCTACCACACACCTTAAGTGTGACAGGACATTTTGTTGCCACACCACTGC
CCACGTGGTGCTCTGAGGGCCTGTAGAAGACAGAACACCCCCCCCAAGAA
AATGTCTTGATCGGGTGTTAGTTAGCCTTTGCTGCCGTAAGGAATACACC
CAAATTTAGATGCTCAAGGCAACTCTGTTCTTTATGATCGAAGTGATCAG
GAGTCCAAATGTATCCTTAAATCCATGTGTCTGGCAATCATGCTCCTTAT
AAAAGGCATATTAGAGAATCTGGTTCACGGCCTCTTTTTGGTTTCTAGAA
GTTACTGGGCCTTTCTTATTATATGCCCCTCCCTCCATCTGCAAAGCTGA
TGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_m15.b1 MSMg01no088_m15.b1 CHROMAT_FILE:
MSMg01no088_m15.b1 PHD_FILE: MSMg01no088_m15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:23 2005
         (232 letters)



>mm_chr8_117553704_117554335
          Length = 632

 Score =  441 bits (228), Expect = e-128
 Identities = 231/232 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctaactctacaaaatgaactctcaatgatttagcttttagtcattgacatgatttctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctaactctacaaaatgaactctcaatgatttagcttttagtcattgacatgatttctg 260

                                                                       
Query: 61  agaaaaccaccaagggctgcgagcctcctcctaccatcccttgtccatctaaccagatga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaaaccaccaagggctgcgagcctcctcctaccatcccttgtccatctaaccagatga 320

                                                                       
Query: 121 agtatggttcctgagtgttgaagtgggtcatttgactggaccagtgccttcaggaagagc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtgtggttcctgagtgttgaagtgggtcatttgactggaccagtgccttcaggaagagc 380

                                                               
Query: 181 ccatgtcaggatgaggctgcctgtcttcatcagcccttgccaaggcagaaac 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccatgtcaggatgaggctgcctgtcttcatcagcccttgccaaggcagaaac 432


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 632
Length adjustment: 9
Effective length of query: 223
Effective length of database: 623
Effective search space:   138929
Effective search space used:   138929
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)