BAC Information

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BAC

Clone NameMSMg01-089K16
Chromosome8 (Build37)
Map Location 59,416,969 - 59,417,263
singlet/doubletsinglet
Overlap genenone
Upstream geneGlra3, LOC664812, Hpgd, LOC664948, BC088983, Fbxo8, LOC100040431, EG624433
Downstream geneLOC654355, LOC100040515, Hand2, Scrg1, Sap30, Hmgb2, LOC547012, Galnt7, LOC100040634, LOC100040711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K16.T7 (MSMg01no089_k16.b1)MSMg01-089K16.TJ (MSMg01no089_k16.g1)
ACCAG308106AG308107
length691700
length of high quality
(start - end)
294 (63 - 356)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no089_k16.b1 PHD_FILE: MSMg01no089_k16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:33 2005CHROMAT_FILE: MSMg01no089_k16.g1 PHD_FILE: MSMg01no089_k16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CATTATTAACTATTGAGAGCTGCATTCACTGACACAAACTTGAAGAAGGC
AGCCATTATAAATGCAGTCTTGGGCATGGTGGAGCATGTCTTTCATCTCA
GCAGTTGGGTGGCAGAGACAGACACACAGGCAGACAGGCACACAGGCAGA
CACACAGACACACAAGCATTTCATCTTTATAGGCATTTTATATTCATTTG
AAGTCTATAGCTTCAGATTTAAGGGACAACTGAAAAAGAAAATCTATGCT
TATTTCTTCTTGAAACATTAGTCTTAATATCCTAGAATGCATGGAGTCAC
AGAACTGAAACTTGACCACCCAATTGTGAAAAGAGACTCATTCATTTCTT
TCAGAGAAGACCTTAAAGCTAAAACATTCAATTCTTGGGTTCTTTCCAAA
GGCTCTGCTCAGCTGTTTTGAAGTTACAGGGGGAAAGAAATGTACTTTTC
CTATGATACCCATTGACATTTTTAAACAGAAATAATTCAAAAATTTTTAA
ACAGTAAGACTTCAAATGTCTGTAGTTAATCCATTGTGGAGAAGAATCTG
TAGGAGAAAACCCTATGAAAAATAAACTCGTAGTATGATCATTTTTTAAA
CTCTGGAGCCGAACTAAATTTTCCTAGGTTTCTGCTTGTCA
CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAGGATCA
AAAATTCAGGTGACAGCAGATGCTGGTGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGATTGCAAGCTTGTACAACCACTCTGGAAATC
AGTCTGGCTGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCACACATCCACAACATGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTTATAGCAGCCTTATTTATAATAGCCAGAAG
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGA
GGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATATTTAGCCCAAAACCTAGGATACCCCAGATATAAGATACAATTTCCT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k16.b1 MSMg01no089_k16.b1 CHROMAT_FILE:
MSMg01no089_k16.b1 PHD_FILE: MSMg01no089_k16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:33 2005
         (294 letters)



>mm_chr8_59416770_59417463
          Length = 694

 Score =  563 bits (291), Expect = e-165
 Identities = 294/295 (99%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgagagctg-cattcactgacacaaacttgaagaaggcagccattataaatgcagtctt 59
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttgagagctgtcattcactgacacaaacttgaagaaggcagccattataaatgcagtctt 259

                                                                       
Query: 60  gggcatggtggagcatgtctttcatctcagcagttgggtggcagagacagacacacaggc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gggcatggtggagcatgtctttcatctcagcagttgggtggcagagacagacacacaggc 319

                                                                       
Query: 120 agacaggcacacaggcagacacacagacacacaagcatttcatctttataggcattttat 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agacaggcacacaggcagacacacagacacacaagcatttcatctttataggcattttat 379

                                                                       
Query: 180 attcatttgaagtctatagcttcagatttaagggacaactgaaaaagaaaatctatgctt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 attcatttgaagtctatagcttcagatttaagggacaactgaaaaagaaaatctatgctt 439

                                                                  
Query: 240 atttcttcttgaaacattagtcttaatatcctagaatgcatggagtcacagaact 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 atttcttcttgaaacattagtcttaatatcctagaatgcatggagtcacagaact 494


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 694
Length adjustment: 9
Effective length of query: 285
Effective length of database: 685
Effective search space:   195225
Effective search space used:   195225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)