Query= MSMg01no090_a19.b1 MSMg01no090_a19.b1 CHROMAT_FILE:
MSMg01no090_a19.b1 PHD_FILE: MSMg01no090_a19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:05 2005
(527 letters)
>mm_chr8_49538823_49539749
Length = 927
Score = 710 bits (367), Expect = 0.0
Identities = 406/425 (95%), Gaps = 11/425 (2%)
Strand = Plus / Minus
Query: 106 tggagcttattaaataaagaattatttatttaatttatgtagaaggatgcactatagctg 165
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 927 tggagcttattaaataaagaattatttatttaatttatgtagaaggatacactatagctg 868
Query: 166 tcttcaggcacatcagaagagggcatcagatcccattacaggcggttgtgagttaccatg 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tcttcaggcacatcagaagagggcatcagatcccattacaggcggttgtgagttaccatg 808
Query: 226 tgcttgctgggaattgaactcatgacctctggaattgcagtcagtgctcttatcttctga 285
|| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 807 tggttgctgggaattgaactcatgagctctggaagagcagtcagtgctcttatcttctga 748
Query: 286 gccgtccagggagcttttcctccaa---agtgcctttggttctcacctattggctaatgc 342
||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 747 gccgtccagggagct--------aaatcagtgcctttggttctcacctattggctaatgc 696
Query: 343 cattggtggatggccatgcctgctcagtcattctgcaaagggccttcatctcaggaacag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 cattggtggatggccatgcctgctcagtcattctgcaaagggccttcatctcaggaacag 636
Query: 403 caggcataaaactggtattgtcacatctgcatcatgattctcctaccatacccatgggct 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 caggcataaaactggtattgtcacatctgcatcatgattctcctaccatacccatgggct 576
Query: 463 gccatgggggaatctagcagtagtcctaactgtgccacaggaacaggcagcatgactcta 522
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||
Sbjct: 575 gccatgggggaatctagcagtagtcttaactgtgccacaggaacaggcagcaggacacta 516
Query: 523 tgaat 527
|||||
Sbjct: 515 tgaat 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_a19.g1 MSMg01no090_a19.g1 CHROMAT_FILE:
MSMg01no090_a19.g1 PHD_FILE: MSMg01no090_a19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:05 2005
(288 letters)
>mm_chr8_49461370_49462057
Length = 688
Score = 495 bits (256), Expect = e-144
Identities = 280/288 (97%), Gaps = 2/288 (0%)
Strand = Plus / Plus
Query: 1 aatggaagtttccaggctggagcagcaagcacctttacctgctgagccatcttgccagcc 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatgaaagtttccaggctggagcagcaagcacctttacctgctgagccatcttgccagcc 260
Query: 61 ccaacatgtctctttttaggctggctatagtctccttgcttggactgtaaccatttttta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 ccaacatgtctctttttaggctggctatagtctccttgcttggactgtaaccaattttta 320
Query: 121 tgatggcaaaaatgaaaatatttctcacgtagttgaaaaacattctctccataacctctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatggcaaaaatgaaaatatttctcacgtagttgaaaaacattctctccataacctctt 380
Query: 181 cggtcccctctaccccccggtaggtttttgtagtacaagttaaaggggcaaaacaaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cggtcccctctaccccccggtaggtttttgtagtacaagttaaagggacaaaacaaaaca 440
Query: 241 aaacataacaaaacaaaacaaaaacaaaagcaaaaacccttatgaagt 288
||||| || |||| ||||||||||||||| |||||||||| |||||||
Sbjct: 441 aaacaaaa-aaaa-aaaacaaaaacaaaaacaaaaaccctcatgaagt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
