BAC Information

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BAC

Clone NameMSMg01-091D16
Chromosome8 (Build37)
Map Location 29,986,687 - 29,986,882
singlet/doubletsinglet
Overlap geneUnc5d
Upstream geneEG666422, LOC666430, EG666446, LOC100042598
Downstream geneLOC100041237
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091D16.T7 (MSMg01no091_d16.b1)MSMg01-091D16.TJ (MSMg01no091_d16.g1)
ACCAG309236AG309237
length852742
length of high quality
(start - end)
96 (132 - 227)196 (135 - 330)
definitionCHROMAT_FILE: MSMg01no091_d16.b1 PHD_FILE: MSMg01no091_d16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:40 2005CHROMAT_FILE: MSMg01no091_d16.g1 PHD_FILE: MSMg01no091_d16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTTTACTTTTTAAAAATTAAATCCTTATCCTTCTAATGTTCCGCGTAGC
NATTGAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGA
ATCCGCGGAATTCATGTACTACTTCCCTGTGTGGCTTCCCCTGAAAGAGG
GAAACCATAGACAGAGCAGAGGTCAGTTCATCAGCCATCATCGAGGCGGA
TATCTTAGAATCTCTGCAGAATCTTACAAGTAATCACAGGAAAGAAATGA
TCGGAGAATATTTAAAGCATAGAATTTTGAGCTGGGTGATGTACAGGTTA
GGCTCAACAAAGTACTGGTCTGGTATAGAGCAGTGTGAAATATGTTTGAC
GGGTTTAATTATATATGGATTGAGATAGAAATAGTATTGTTGTTTCTAAG
CCATTCATCTTACCCGCTCTTAAATCTCTTGTCTCTCCATATCTCTCTTT
TGCCCTTCCCTCATTAATTCTTTTAATATGCACCCTCACTATTATGTTCA
TCTACTTTCTCAGAATCTGTTACTGCTCTTATAGTACGTCATTTTCTTTC
GCCTGTTGTCTTCATTTTTTGCCTTATCATTGGTTTTATTCCTTCTTACT
ATTTTTTGCCTTTTTTTCCTCCGTTCTGCGAGTTTTCAGATTTCCTCTAG
TTTTCCCTCTTACAATTACCTTCCGTGTCGTTCACCCCTCCGCCCCTCTT
CCCCCCTTTTTTTCGTCCTTTTACCCACCCACTTTTTCTTCACTTTCAAT
CCTTTCCTCATTCCCTACTTTCCTTTCCCTCCCTTCCTCCCACCTTTTTC
TTCTCTGCCCCCTCCTCCTTTTTTTTTTCTTCCCTTCTTCCGCTAGGCTC
TN
TTATACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGAAATGGCACAAATAGTGGC
ATCAAAGGTTGAGAACAAAGTCTAAAGGCCACAAAGCAAATGGACAGGAC
AGAAAGGAAGCAGCCATTTTGATCTATAAGTCTAAGAATCCAGACAGAGG
ACCAAGGAAAACTCTCAGAGTAGTGCTGTGAGAAGATGGGGCAAGGGTTA
TAGAAACAGCAGAAAAGAAACACCTGAGCTAGGATAAAGCTGAAGACTTG
TAACCTTTCAATGAGATTTTTATGACTCTGTATTGTCCTTCTAATCATTA
TGAACAGGCTTGGTACGTGTATATTGCGGAGCTCAAACTCATTCATTCTT
CTGGACAAGGACCACTGGGCCCCTTCTATGCATATGTCAAGGTTGGCTAA
CCTCCCTGCAGCGTCATGGATGATAGCGGACATTCCTTCTAGCTCCTTTA
CTTACTTAATGACAAGCTCGGTTCCAGTCTTTAGTTTTCACGCCTTTCTG
TCCCACAGACTTTGCCTGATATCGCCTCGCCATTAAACCATTGCCCTTCA
ACGCCTGGACCTATACTCCTGTTTCGCCCTGAGCCTCATAACACCTTATC
CTCTACTCCGGTGCCCTCCCCTCCAGATGGCACATCGTCCTCGCCTCCCC
TGATTGAGACCATAACATCCCTTTGCCTTAAAAACCCGCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_d16.g1 MSMg01no091_d16.g1 CHROMAT_FILE:
MSMg01no091_d16.g1 PHD_FILE: MSMg01no091_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:40 2005
         (196 letters)



>mm_chr8_29986487_29987082
          Length = 596

 Score =  364 bits (188), Expect = e-105
 Identities = 194/196 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcaaatggacaggacagaaaggaagcagccattttgatctataagtctaagaatccaga 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 agcaaatggacaggacagaaaggaagcagccatcttgatctataagtctaagaatccaga 260

                                                                       
Query: 61  cagaggaccaaggaaaactctcagagtagtgctgtgagaagatggggcaagggttataga 120
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 261 cagaggaccaaggaaaactctcagagtagtgctgtgagaagatggagcaagggttataga 320

                                                                       
Query: 121 aacagcagaaaagaaacacctgagctaggataaagctgaagacttgtaacctttcaatga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacagcagaaaagaaacacctgagctaggataaagctgaagacttgtaacctttcaatga 380

                           
Query: 181 gatttttatgactctg 196
           ||||||||||||||||
Sbjct: 381 gatttttatgactctg 396


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space:   110544
Effective search space used:   110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)