BAC Information

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BAC

Clone NameMSMg01-091F03
Chromosome8 (Build37)
Map Location 26,111,497 - 26,111,769
singlet/doubletsinglet
Overlap geneAdam9
Upstream geneZmat4, 1810011O10Rik, Indol1, Indo, Adam18, Adam3, Adam5, Adam32
Downstream geneTm2d2, Htra4, Plekha2, LOC100042390, Tacc1, LOC670822, LOC100040998, Fgfr1, D030041N04Rik, LOC100042416, Whsc1l1, Ppapdc1, Bag4, Lsm1, Star, Ash2l, Kcnu1, Hgsnat, 4930444A02Rik, Fnta
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091F03.T7 (MSMg01no091_f03.b1)MSMg01-091F03.TJ (MSMg01no091_f03.g1)
ACCAG309304AG309305
length675699
length of high quality
(start - end)
292 (56 - 347)44 (86 - 129)
definitionCHROMAT_FILE: MSMg01no091_f03.b1 PHD_FILE: MSMg01no091_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:47 2005CHROMAT_FILE: MSMg01no091_f03.g1 PHD_FILE: MSMg01no091_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:44:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTTAACTTGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTCTATGCCCAGGATGCAAGTTCTTTAGTTTGCAC
TACACAAAAAACATAAAGGAAGTGCTGACTTTACCCTGTCTATTTCTAGT
CCGCTATCTGTTCCTTTATCTTAGTATATGAGCATTGTTTAATAGAAAGC
TCATGGAAGAGATTAAATTTACATTGTAGTATATACCAGATAAAAGAGCA
TCTATTCTTTCAACCATCCAGAGATGTCTATGTGAGAAGCCACAGACCAC
AGCTGATGTTGAGCGCTATTGTTCCTTCTTAGAGTCTTCTTCTCTCCCTA
CAGACACTGTTAGGCTTGAATTCTGGCTCTGGTTCATTGTCTGGTGAAGT
CGTATCAACCTGCTTGTACTTCGGTATCGACCTCTTCTCTCTAACCTGGA
CTTAGCAGTTATCACTTCTCGGAGTTTCTAACAAACTCTAACAAATTACT
GCTTGAGCGCTTACAAGAGACTGCCTGGCCCTTCACCACCAAATATATCC
ATTATTCTTTACTGACCTACTATCTGCTTTAACCCGCCTATTTCCATTTT
ATCTGTGCCCGACCTCCCATACCTTGACTTTTTATCTCCCGCCTTTATTC
TGCCCCATGTCTTACTATTTTTCTT
TACATCCCCCTACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAACCCTAGAATGA
AAATACAATCTATAAAATCTATGACTCTCACCCCTGGTGGTTGTCTTAGT
TACTCTTCTGTTGCTGTGCAGACACCATGACCAAAGCTGCTTGAGTGTAT
TGGGGTTTATAGTTTCAGAGGGTGAGCCCATGACTATCATGGCACCAGGA
AAGCATGGTTACGGCTCTGCATTAGTACCATGGCCCCAATAGCTCTCTCC
CTGAGACAGATACCCCTCTTTTTCACATAACTGTCCTGTCGCGGTCTCCT
GAAACCTCAAAGCCTACCTCTCTGATACCTCCCCAATACCCCCACATTCT
GTCCTCCCTCATTTGTTCCACCATCTGCGTACTCAGAACATTACTGATTG
TATTTTCACTCTACGATCTCGATATCTCCCTTCTTCACCTTTTCTATTTT
CTGACTTTCCTCCTGCCCCTTTCTTTTATTTCGGTATGTCTGTTTTCACA
CCTTTCTTTCTCCACCCATTTCCCTATCTCCGTATCACCTTTTTTCCACC
CTCTTATCTCTTTTTCCTTTTTCCCCATCCCCTTTCGTTCCCTTCCCCTC
TACCCTAATTTATCCCTCTTCCTTCCCCTTCCCCCCCTTCCTCCACCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_f03.b1 MSMg01no091_f03.b1 CHROMAT_FILE:
MSMg01no091_f03.b1 PHD_FILE: MSMg01no091_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:44:47 2005
         (292 letters)



>mm_chr8_26111278_26111969
          Length = 692

 Score =  489 bits (253), Expect = e-143
 Identities = 268/273 (98%)
 Strand = Plus / Minus

                                                                       
Query: 20  caggatgcaagttctttagtttgcactacacaaaaaacataaaggaagtgctgactttac 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 caggatgcaagttctttagtttgcactacacaaaaaacataaaggaagtgctgactttac 433

                                                                       
Query: 80  cctgtctatttctagtccgctatctgttcctttatcttagtatatgagcattgtttaata 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 cctgtctatttctagtccgctatctgttcctttatcttagtatatgagcattgtttaata 373

                                                                       
Query: 140 gaaagctcatggaagagattaaatttacattgtagtatataccagataaaagagcatcta 199
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 372 aaaagctcatggaagagattaaatttacattgtagtatataccagatagaagagaatcta 313

                                                                       
Query: 200 ttctttcaaccatccagagatgtctatgtgagaagccacagaccacagctgatgttgagc 259
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 312 ttctttcaaccatccagagatgtctatgtgagaagccacagaccacagttgatgttgagc 253

                                            
Query: 260 gctattgttccttcttagagtcttcttctctcc 292
           | |||||||||||||||||||||||||||||||
Sbjct: 252 gttattgttccttcttagagtcttcttctctcc 220


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)