BAC Information

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BAC

Clone NameMSMg01-091M18
Chromosome8 (Build37)
Map Location 4,792,378 - 4,792,809
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664870, Cd209e, Cd209d, Cd209b, Cd209c, LOC664888, EG384770, EG664905, LOC664915, LOC664922, LOC631071, Cd209f, Cd209g, B130050I23Rik, BC068157, Lrrc8e, Map2k7, LOC100039590, Snapc2, Ctxn1, Timm44, Elavl1, Ccl25, LOC664977, Ppia-ps8_36.1, Lass4, Vmn2r-ps89, EG633533, BC003267, LOC665021, EG623133, EG665044, EG623223, LOC100040234, Shcbp1, EG622568
Downstream geneLOC669393, EG631359, LOC100039687, LOC436026, Slc10a2, LOC434275, LOC623409, LOC669429
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091M18.T7 (MSMg01no091_m18.b1)MSMg01-091M18.TJ (MSMg01no091_m18.g1)
ACCAG309649AG309650
length716714
length of high quality
(start - end)
436 (39 - 474)294 (126 - 419)
definitionCHROMAT_FILE: MSMg01no091_m18.b1 PHD_FILE: MSMg01no091_m18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:25 2005CHROMAT_FILE: MSMg01no091_m18.g1 PHD_FILE: MSMg01no091_m18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:25 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTT
TGTATATCCTGTTCGGATCATAGTGACCTTCTTTATAGAACACAGTGATA
CTCTGAGCCTTATGGCTATTTTTATCACAATATAGTTAAAAGATTCTTAT
GATCAATCTTGTGGTGCTATTGTCTTCTGATTTAAATAAGTAAATACTAC
TGTTTTTAAAAATGGTTTTATATGTTTGGGTGTTCTGTCTGTATGTATAT
CTGTGCACCACCTATGTGCTTGATGCCTATGGAAGTCAGAGGAGGGAAAT
GGATACCATGGAACTGGAGTTATAGATGGTTGTGAGCTGCAATGTGGTAT
CTGAGAATTGAACCTGAAAGTCTCTGTGAGGAACCCCTCGTTCAGGCCTT
GGGGCAATAGCGGACACCCAAAAATTCACGAGAGACCAAGCATGACGCAT
ACCACATGAGGCTTTATTGGGGAAAGCCATAGCTCTGGGGACAACTTGTA
TCCCACGCAGCGGTAGAGTATTCTAACTCCCATACAGGATTTCGTATGGA
GTGAGCTTAAATTTCCTCTGAGTGTTCCTGATGCAGAACAAGGCAAAGGG
AAGGATGGCTGTCCAGTCATTCCTGCCGGTTTCTAAGATCCATTTAGTCA
ATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCTCA
TGCTTTCCCCTTCTCA
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGTTTACCTCTGTGCCCCATTTTTT
AATAGGGTTATTTTGTTCTCCGGAGTCAGACTCAAAAAAAAAAATTAGCT
TGAGTTCTTTGTATATATTGGATATTAGCCCTCTGTCGGATGTAGGGTTG
GATATTGGTAAAGATCTTTTCCCAATCTGTTGGTTGCTTTTCTGTCCTAT
TGGCAGTGTCCTTTGCCTTACAGAAACTTTGCAAGTTTATGAGGTTCCAT
TTGTCCATTCTTGATCTTAGAGCATAGGCTTGTGCTCAAAAAATTTTCCC
CTGTGCCCATGTGCTTGAGACTCTTCCCCATTTTCTCCTCATTAATTTCA
TTCAGCGTATCTGGTTTAAGCAGTAACAAGGAGGGACTCATGGTTCCATT
TGCATATGTAGCACAGGATGGCCTAGTTGGCCATCAATGTTAGAAGAGGC
CCTTGATCCTGTGAAGGTTCTATAGCCCCAATGTATGCAAATGCCACAGC
CAGTAAGTTGGTGTGCTTGGTTTGTTGAGCAGTGTCATGTACCCCCTTTT
CCCCCCTCCCCCCTTTCTCTTTCCTCTCAACTTCTTCCCCTTTCCCCATT
CCCCATTTCCTCTCTTCTTTCCTCCTTCCCCTTTTTTTTTCTCCTCTCTT
TTTTTCCTTCTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_m18.b1 MSMg01no091_m18.b1 CHROMAT_FILE:
MSMg01no091_m18.b1 PHD_FILE: MSMg01no091_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:25 2005
         (436 letters)



>mm_chr8_4792174_4793009
          Length = 836

 Score =  789 bits (408), Expect = 0.0
 Identities = 426/432 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctttgtatatcctgttcggatcatagtgaccttctttatagaacacagtgatact 64
           |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctttgtaaatcatgttcggatcatagtgaccttctttatagaacacagtgatact 264

                                                                       
Query: 65  ctgagccttatggctatttttatcacaatatagttaaaagattcttatgatcaatcttgt 124
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctgagccttatggatatttttatcacaatatagttaaaagattcttatgatcaatcttgt 324

                                                                       
Query: 125 ggtgctattgtcttctgatttaaataagtaaatactactgtttttaaaaatggttttata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggtgctattgtcttctgatttaaataagtaaatactactgtttttaaaaatggttttata 384

                                                                       
Query: 185 tgtttgggtgttctgtctgtatgtatatctgtgcaccacctatgtgcttgatgcctatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgtttgggtgttctgtctgtatgtatatctgtgcaccacctatgtgcttgatgcctatgg 444

                                                                       
Query: 245 aagtcagaggagggaaatggataccatggaactggagttatagatggttgtgagctgcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagtcagaggagggaaatggataccatggaactggagttatagatggttgtgagctgcaa 504

                                                                       
Query: 305 tgtggtatctgagaattgaacctgaaagtctctgtgaggaacccctcgttcaggccttgg 364
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 505 tgtggtatctgagaattgaacctgaaagtctctgtgaggaacccctcgctcaggccttgg 564

                                                                       
Query: 365 ggcaatagcggacacccaaaaattcacgagagaccaagcatgacgcataccacatgaggc 424
           ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 565 ggcaatagcagacacccaaaaattcacgagagaccaagcatgacgcaaaccacatgaggc 624

                       
Query: 425 tttattggggaa 436
           ||||||||||||
Sbjct: 625 tttattggggaa 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)